Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1708X
         (419 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT001776-1|AAN71531.1|  137|Drosophila melanogaster RH13862p pro...    28   5.8  
AY060384-1|AAL25423.1|  145|Drosophila melanogaster LD28904p pro...    28   5.8  
AE014296-949|AAN12119.1|  103|Drosophila melanogaster CG10640-PB...    28   5.8  
AE014296-948|AAF50784.1|  145|Drosophila melanogaster CG10640-PA...    28   5.8  
BT025810-1|ABF85710.1|  267|Drosophila melanogaster IP01927p pro...    27   7.7  
AE014296-1809|AAF50163.2|  404|Drosophila melanogaster CG14156-P...    27   7.7  

>BT001776-1|AAN71531.1|  137|Drosophila melanogaster RH13862p
           protein.
          Length = 137

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = +3

Query: 243 KFCIDIN*NCTNQSNSII*TTQFRLGLNFSRMFRVTTIPQ 362
           +F   +N NC NQ+N ++     ++   +SR + + T+ Q
Sbjct: 75  RFITKVNINCINQNNGVVDHRSVQMLARWSREYNIKTMLQ 114


>AY060384-1|AAL25423.1|  145|Drosophila melanogaster LD28904p
           protein.
          Length = 145

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = +3

Query: 243 KFCIDIN*NCTNQSNSII*TTQFRLGLNFSRMFRVTTIPQ 362
           +F   +N NC NQ+N ++     ++   +SR + + T+ Q
Sbjct: 83  RFITKVNINCINQNNGVVDHRSVQMLARWSREYNIKTMLQ 122


>AE014296-949|AAN12119.1|  103|Drosophila melanogaster CG10640-PB,
           isoform B protein.
          Length = 103

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = +3

Query: 243 KFCIDIN*NCTNQSNSII*TTQFRLGLNFSRMFRVTTIPQ 362
           +F   +N NC NQ+N ++     ++   +SR + + T+ Q
Sbjct: 41  RFITKVNINCINQNNGVVDHRSVQMLARWSREYNIKTMLQ 80


>AE014296-948|AAF50784.1|  145|Drosophila melanogaster CG10640-PA,
           isoform A protein.
          Length = 145

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = +3

Query: 243 KFCIDIN*NCTNQSNSII*TTQFRLGLNFSRMFRVTTIPQ 362
           +F   +N NC NQ+N ++     ++   +SR + + T+ Q
Sbjct: 83  RFITKVNINCINQNNGVVDHRSVQMLARWSREYNIKTMLQ 122


>BT025810-1|ABF85710.1|  267|Drosophila melanogaster IP01927p
           protein.
          Length = 267

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -3

Query: 327 SLNPNETVLFKLLSYSDLYNFNL 259
           S NP +++LFK+  Y+   NFNL
Sbjct: 35  STNPLKSLLFKIYLYAGFINFNL 57


>AE014296-1809|AAF50163.2|  404|Drosophila melanogaster CG14156-PA
           protein.
          Length = 404

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -3

Query: 327 SLNPNETVLFKLLSYSDLYNFNL 259
           S NP +++LFK+  Y+   NFNL
Sbjct: 35  STNPLKSLLFKIYLYAGFINFNL 57


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,520,778
Number of Sequences: 53049
Number of extensions: 232451
Number of successful extensions: 242
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 240
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 242
length of database: 24,988,368
effective HSP length: 78
effective length of database: 20,850,546
effective search space used: 1271883306
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)