Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1708X
         (419 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    23   1.8  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    23   1.8  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    21   5.6  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    21   5.6  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    21   7.5  

>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 22.6 bits (46), Expect = 1.8
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +3

Query: 198 IIPVIYNLYSIKLMSKF 248
           I P++YNL SIK  + F
Sbjct: 323 INPILYNLMSIKYRNAF 339


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 22.6 bits (46), Expect = 1.8
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = -3

Query: 300 FKLLSYSDLYNFNLCQYRTLTLVLYYIDY 214
           +K  +Y++  N+N   Y      LYY +Y
Sbjct: 322 YKYSNYNNYNNYNNNNYNNYNKKLYYKNY 350


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.0 bits (42), Expect = 5.6
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -1

Query: 206 RNDKLNMNTITYLYVNKLYN 147
           +ND L  N   YLY N + N
Sbjct: 367 KNDVLLSNNDVYLYQNTMSN 386


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.0 bits (42), Expect = 5.6
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -1

Query: 206 RNDKLNMNTITYLYVNKLYN 147
           +ND L  N   YLY N + N
Sbjct: 405 KNDVLLSNNDVYLYQNTMSN 424


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 12/26 (46%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
 Frame = -1

Query: 212 NYRNDKLNMNTITYLYVNKL-YNI*N 138
           NY N+  N N   Y    KL YNI N
Sbjct: 333 NYNNNYNNYNNNNYNNYKKLYYNIIN 358


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,164
Number of Sequences: 438
Number of extensions: 2282
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10750329
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)