Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1707
         (753 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q557K8 Cluster: Putative uncharacterized protein; n=2; ...    33   5.7  

>UniRef50_Q557K8 Cluster: Putative uncharacterized protein; n=2;
           Dictyostelium discoideum|Rep: Putative uncharacterized
           protein - Dictyostelium discoideum AX4
          Length = 303

 Score = 33.5 bits (73), Expect = 5.7
 Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
 Frame = +3

Query: 390 WHIYEMCQKMYFLLVLNKNKSLNADKQTKVPMTLI*HITLLQNDIQVKNTCVRESDSLI- 566
           +++Y+ C  +Y++  LN N SL A K T   +  I     L       +TC+ + D ++ 
Sbjct: 225 YYVYQSC--LYYVFALNNNDSLLASKNTSYKIKYINGKNYLFVGFNRNDTCISKKDCVVN 282

Query: 567 LPKCESLNDHL 599
           +P  +   D+L
Sbjct: 283 IPTEKDFIDYL 293


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 588,141,392
Number of Sequences: 1657284
Number of extensions: 10619271
Number of successful extensions: 18402
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 17643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18391
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 62146450145
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)