Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1707
         (753 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogam...    27   2.2  
SPAC458.03 |||nuclear telomere cap complex subunit |Schizosaccha...    26   6.6  
SPAC29E6.07 ||SPAC30.11|sequence orphan|Schizosaccharomyces pomb...    25   8.8  

>SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogamy
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 543

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 531 KNTCVRESDSLILPKCESLNDHLTI 605
           K+TC +E  + ++ KC  LN  LTI
Sbjct: 28  KSTCYQEVAATLISKCSLLNTELTI 52


>SPAC458.03 |||nuclear telomere cap complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 868

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 9/31 (29%), Positives = 20/31 (64%)
 Frame = -3

Query: 589 FKLSHFGKIKLSDSLTHVFLTCMSFCSNVMC 497
           F L +F +++++ ++  + LTC+  C  V+C
Sbjct: 565 FDLMNFDEMQMT-AIVELLLTCLDICGPVIC 594


>SPAC29E6.07 ||SPAC30.11|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 116

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -1

Query: 474 SSACLHLVIYFYLVQVKNTFSDTFHKYAIR 385
           S  CL +V +FYL+ V+   S  F K   R
Sbjct: 36  SPQCLFIVYFFYLLHVRINTSPLFIKTTTR 65


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,667,555
Number of Sequences: 5004
Number of extensions: 51093
Number of successful extensions: 81
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)