Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1707
         (753 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    23   4.1  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    23   4.1  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    22   7.1  

>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +1

Query: 199 IIPVIYNLYSIKLMSKF 249
           I P++YNL SIK  + F
Sbjct: 323 INPILYNLMSIKYRNAF 339


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = -3

Query: 301 FKLLSYSDLYNFNLCQYRTLTLVLYYIDY 215
           +K  +Y++  N+N   Y      LYY +Y
Sbjct: 322 YKYSNYNNYNNYNNNNYNNYNKKLYYKNY 350


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -3

Query: 733 IKIKRKYSNIIILTFPFLYK 674
           +K+KR+ S I++  FP  Y+
Sbjct: 355 LKVKRRISFILVHGFPLEYE 374


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,064
Number of Sequences: 438
Number of extensions: 4097
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23632110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)