Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1707
         (753 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g24450.1 68417.m03505 starch excess protein-related similar t...    30   1.4  
At3g22104.1 68416.m02789 phototropic-responsive NPH3 protein-rel...    29   4.4  

>At4g24450.1 68417.m03505 starch excess protein-related similar to
           SEX1 [Arabidopsis thaliana] GI:12044358
          Length = 1284

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -2

Query: 146 FKTTIYLQVINYNSNEPPQVSYTI 75
           FKTTI  ++I+ N N PP++ Y I
Sbjct: 684 FKTTIEKRLISLNFNNPPEIIYVI 707


>At3g22104.1 68416.m02789 phototropic-responsive NPH3
           protein-related contains BTB/POZ domain,
           INTERPRO:IPR000210
          Length = 506

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 15/43 (34%), Positives = 26/43 (60%)
 Frame = -3

Query: 751 MKVFFKIKIKRKYSNIIILTFPFLYKLFKVK*DKL*YCASPKH 623
           +++F K+ + RK+ N+II  F F Y+  KVK     +C++  H
Sbjct: 201 VEMFLKLMVLRKFDNLIISRFLFYYQ--KVK-----FCSASSH 236


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,645,394
Number of Sequences: 28952
Number of extensions: 223292
Number of successful extensions: 336
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 331
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 336
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1672953192
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)