Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1706
         (741 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC409.18 |||phosphatidic acid phosphatase |Schizosaccharomyces...    35   0.014
SPAC25B8.06c |||serine-tRNA ligase|Schizosaccharomyces pombe|chr...    27   3.7  
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    26   6.5  

>SPBC409.18 |||phosphatidic acid phosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 279

 Score = 34.7 bits (76), Expect = 0.014
 Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 5/58 (8%)
 Frame = -2

Query: 623 TQFLADICM---CLVIYF*SGRAENSLLFHFSSIDKIE*TLFC--CVSLLFNSVPRPK 465
           T++L  IC+    LV+Y       NSLLF  S +  +  T+ C  CVSLL N+V RP+
Sbjct: 61  TKYLGIICVFFPALVLYGFGKLRNNSLLFWKSLMGLLYSTMVCGLCVSLLKNAVGRPR 118


>SPAC25B8.06c |||serine-tRNA ligase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 454

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +1

Query: 349 AWYLIKLLLGVITSASNAFDYKFRR 423
           AW   +   G ITSASN  +Y+ RR
Sbjct: 369 AWMPARQSYGEITSASNCLEYQARR 393


>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1367

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = -1

Query: 681 IPLKDESILFQCHPSN*IRYPVFSRYMYVPRNLFLKWKS 565
           IP +   +  Q  PSN IR   ++   ++P+NL+ ++K+
Sbjct: 116 IPEEHRHLPSQWFPSNKIRTTKYTPVSFIPKNLWNQFKN 154


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,985,348
Number of Sequences: 5004
Number of extensions: 60711
Number of successful extensions: 92
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)