Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1706
         (741 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38825| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_52562| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.1  

>SB_38825| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 100

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +1

Query: 169 HNIKSHNYCHLVVYLLSTVISITVEHTPSVCDR 267
           H+   H Y H +V ++ ++I I +  TPS+  R
Sbjct: 66  HHHYDHRYNHTIVIIIPSIIIIAIITTPSIMSR 98


>SB_52562| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1490

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -3

Query: 520 NKHYSVVFHYYLTVCQGQKSSKLIVIFIITIYL 422
           N H++  F Y   VC   +   +I+I IITI +
Sbjct: 183 NLHFADTFLYCTEVCTDPEPKPIIIIIIITIII 215


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,321,802
Number of Sequences: 59808
Number of extensions: 409025
Number of successful extensions: 593
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 593
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1998111622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)