Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1705
         (637 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20H4.08 |||phosphatase activator |Schizosaccharomyces pombe|...    31   0.11 
SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomy...    31   0.18 
SPCC2H8.02 |||inorganic phosphate transporter|Schizosaccharomyce...    26   5.2  
SPBC119.14 |rti1||Rad22 homolog Rti1|Schizosaccharomyces pombe|c...    26   5.2  
SPAC458.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   6.9  
SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase Ogm2|Schizo...    25   9.1  

>SPAC20H4.08 |||phosphatase activator |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 270

 Score = 31.5 bits (68), Expect = 0.11
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = +3

Query: 198 IHFFSRGCLLIIPRIDLPCIMETVTFWDRPNG 293
           IHF  RG L++I R++LP +  TV     PNG
Sbjct: 29  IHFNIRGKLIVIDRVELPILPTTVLALLFPNG 60


>SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 656

 Score = 30.7 bits (66), Expect = 0.18
 Identities = 20/87 (22%), Positives = 44/87 (50%), Gaps = 4/87 (4%)
 Frame = +1

Query: 10  VKLMIATAIFFTYSLQFYVPMEIIWNNVRHWFGAKKNLAEYS---IRIALIVMTVCIAIA 180
           ++ + A AI  +  LQ +  + II   +    G +    ++    +R+ ++++ + I+ A
Sbjct: 534 IQFLYAIAILLSTPLQLFPAIAIIEQGIFTRSGKRNRKIKWRKNYLRVLIVILAILISWA 593

Query: 181 IPD-LGPFISLVGAVCLSFLGLIFPAL 258
               L  F+S+VG+VC   L  ++P +
Sbjct: 594 GSSRLDLFVSMVGSVCCIPLIYMYPPM 620


>SPCC2H8.02 |||inorganic phosphate transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 583

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = +1

Query: 142 IALIVMTVCIAIAIPDLGPFISLVGAVCLSFLGLIFPALWKLLP 273
           +A +++  C    + D G +  L G   + F   +FPA+  L+P
Sbjct: 198 VATLIILACFEKPLNDRGEYTKLNGVWRIQFGIALFPAVIVLIP 241


>SPBC119.14 |rti1||Rad22 homolog Rti1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 371

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -2

Query: 174 SDANRHHNQSDPDAVFGKILLSSKPVTDVVPNDFH 70
           S AN+       +++  KI    KP++D++ ND H
Sbjct: 194 SHANKSVKLEHKNSIEKKISNVDKPISDLIENDIH 228


>SPAC458.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 340

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 16/54 (29%), Positives = 24/54 (44%)
 Frame = +3

Query: 162 GLHRYSYSGSWTIHFFSRGCLLIIPRIDLPCIMETVTFWDRPNGLGRFNWVLWK 323
           GLH    +    I  F R  LL +P   +  I    T W+  N L ++N++  K
Sbjct: 166 GLHTSVDNSQEFILQFLRTTLLSVPTSSIVSISADPTSWNNLNVLMKYNFMFQK 219


>SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase
           Ogm2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 739

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -1

Query: 403 DPSITSTMLTYEPVKNPRIPKEIMNTF 323
           DPS T T    E   NPR+P+  +N +
Sbjct: 508 DPSNTDTQWNVEEHINPRLPEGSINDY 534


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,821,223
Number of Sequences: 5004
Number of extensions: 61637
Number of successful extensions: 164
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)