Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1705
(637 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0456 + 34057986-34058186,34058295-34058978,34059063-34059434 46 2e-05
05_05_0039 - 21782093-21782320,21782383-21782754,21783031-217834... 42 5e-04
01_06_1392 + 36995579-36996028,36997145-36997375 39 0.003
02_05_1018 - 33530834-33530926,33531036-33531098,33531193-335312... 37 0.015
03_02_0338 + 7614199-7614450,7614518-7614703,7614815-7614927,761... 35 0.047
10_01_0267 - 2828966-2829340,2831164-2831629,2833390-2833487,283... 34 0.11
11_01_0433 - 3323372-3324616,3324708-3324905 33 0.14
04_04_0819 - 28312667-28313219,28315157-28316430 33 0.14
01_01_0113 + 842543-843191,844964-844987,845202-846274 31 0.58
10_08_0001 + 13984436-13984514,13984804-13984926,13985181-139854... 31 0.77
07_01_0248 - 1821340-1821996,1823619-1823761,1824239-1824453,182... 31 0.77
06_01_0872 + 6687849-6687864,6689622-6690235,6690927-6691478 30 1.8
12_01_0522 - 4143921-4144556,4144656-4144798,4144903-4145551 29 2.3
12_01_0520 + 4120030-4120678,4120783-4120925,4121025-4121660 29 2.3
04_04_0125 + 22944505-22944556,22944665-22945363,22946445-22946947 29 4.1
02_01_0225 - 1469295-1469733,1472352-1472767,1473603-1473658,147... 28 5.4
03_02_0672 - 10325935-10326150,10326308-10326400,10326568-103267... 28 7.1
02_01_0246 + 1617326-1617367,1618903-1624419,1625040-1625498,162... 28 7.1
01_06_1541 - 38127014-38128022,38128116-38128209,38128302-381285... 28 7.1
11_01_0597 + 4769748-4770166,4770263-4770545,4770725-4771360 27 9.4
05_01_0143 - 944169-947273 27 9.4
>03_06_0456 + 34057986-34058186,34058295-34058978,34059063-34059434
Length = 418
Score = 46.4 bits (105), Expect = 2e-05
Identities = 26/98 (26%), Positives = 48/98 (48%), Gaps = 2/98 (2%)
Frame = +1
Query: 10 VKLMIATAIFFTYSLQFYVPMEIIWNNVRHWFG--AKKNLAEYSIRIALIVMTVCIAIAI 183
VK+++ A+ T+ + + EI+ + G A+K A + R+A++ +A +
Sbjct: 294 VKIVLCVALALTFPVMMHPIHEIVEARLFPSAGGWARKRAAVQASRVAVVGAVTAVACFV 353
Query: 184 PDLGPFISLVGAVCLSFLGLIFPALWKLLPSGTDRTAW 297
P G F + VG+ + L + PAL+ L G +AW
Sbjct: 354 PAFGEFAAFVGSTVCALLSFVLPALFHLRLVGAAASAW 391
>05_05_0039 -
21782093-21782320,21782383-21782754,21783031-21783496,
21784896-21784993,21785179-21785362,21785462-21785574,
21785942-21786127,21786191-21786364
Length = 606
Score = 41.5 bits (93), Expect = 5e-04
Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
Frame = +1
Query: 67 PMEIIWNNVRHWFGAKKNLAEYSIRIALIVMTVCIAIAIPDLGPFISLVGAVCLSFLGLI 246
P+ +W G + L R+ ++V +AI P GP S VGA+ +SF I
Sbjct: 331 PLYFVWEKAIGMHGTRSVLTRALARLPIVVPIWFLAIIFPFFGPINSAVGALLVSFTVYI 390
Query: 247 FPALWKLLP--SGTDRTAWD 300
P+L +L S + R W+
Sbjct: 391 IPSLSHILTYRSASARLIWN 410
>01_06_1392 + 36995579-36996028,36997145-36997375
Length = 226
Score = 39.1 bits (87), Expect = 0.003
Identities = 26/76 (34%), Positives = 35/76 (46%)
Frame = +1
Query: 67 PMEIIWNNVRHWFGAKKNLAEYSIRIALIVMTVCIAIAIPDLGPFISLVGAVCLSFLGLI 246
P+ +W V K R+ ++V +AI P GP S VGA+ +SF I
Sbjct: 74 PLYFVWEKVIGMHDTKSICLRALARLPIVVPIWFLAIIFPFFGPINSAVGALLVSFTVYI 133
Query: 247 FPALWKLLPSGTDRTA 294
PAL +L T RTA
Sbjct: 134 IPALAHIL---TYRTA 146
>02_05_1018 -
33530834-33530926,33531036-33531098,33531193-33531236,
33531973-33532118,33532262-33532281,33532365-33532500,
33532585-33532804,33532905-33533085,33533495-33533518,
33534127-33534341,33534425-33534705,33535987-33536210
Length = 548
Score = 36.7 bits (81), Expect = 0.015
Identities = 16/41 (39%), Positives = 26/41 (63%)
Frame = +1
Query: 136 IRIALIVMTVCIAIAIPDLGPFISLVGAVCLSFLGLIFPAL 258
+R AL+ TVCIA +P G ++L+G++ + +I PAL
Sbjct: 464 LRTALVASTVCIAFLMPFFGLVMALIGSLLSILVAVIMPAL 504
>03_02_0338 +
7614199-7614450,7614518-7614703,7614815-7614927,
7615023-7615206,7615343-7615440,7616113-7616578,
7617342-7617683
Length = 546
Score = 35.1 bits (77), Expect = 0.047
Identities = 18/64 (28%), Positives = 30/64 (46%)
Frame = +1
Query: 67 PMEIIWNNVRHWFGAKKNLAEYSIRIALIVMTVCIAIAIPDLGPFISLVGAVCLSFLGLI 246
P+ +W + + + R+ ++V +AI P GP S VG++ +SF I
Sbjct: 357 PLYFVWEKLIGLHDCRSLFKRAAARLPVVVPIWFLAIIFPFFGPINSAVGSLLVSFTVYI 416
Query: 247 FPAL 258
PAL
Sbjct: 417 IPAL 420
>10_01_0267 -
2828966-2829340,2831164-2831629,2833390-2833487,
2833782-2834078,2834287-2834694
Length = 547
Score = 33.9 bits (74), Expect = 0.11
Identities = 17/64 (26%), Positives = 30/64 (46%)
Frame = +1
Query: 67 PMEIIWNNVRHWFGAKKNLAEYSIRIALIVMTVCIAIAIPDLGPFISLVGAVCLSFLGLI 246
P+ +W + G + R+ +++ +AI P GP S VG++ +SF I
Sbjct: 347 PLYFVWEKLVGLHGCPSLCKRAAARLPVVLPIWFLAIIFPFFGPINSAVGSLLVSFTVYI 406
Query: 247 FPAL 258
P+L
Sbjct: 407 IPSL 410
>11_01_0433 - 3323372-3324616,3324708-3324905
Length = 480
Score = 33.5 bits (73), Expect = 0.14
Identities = 17/64 (26%), Positives = 29/64 (45%)
Frame = +1
Query: 67 PMEIIWNNVRHWFGAKKNLAEYSIRIALIVMTVCIAIAIPDLGPFISLVGAVCLSFLGLI 246
P+ +W G L + R+ +++ +A+ P GP S VG+ +SF I
Sbjct: 341 PLYFVWEKAIGVHGGAGVLRRAAARLPVVLPIWFLAVIFPFFGPINSTVGSFLVSFTVYI 400
Query: 247 FPAL 258
PA+
Sbjct: 401 IPAM 404
>04_04_0819 - 28312667-28313219,28315157-28316430
Length = 608
Score = 33.5 bits (73), Expect = 0.14
Identities = 15/50 (30%), Positives = 28/50 (56%)
Frame = +1
Query: 136 IRIALIVMTVCIAIAIPDLGPFISLVGAVCLSFLGLIFPALWKLLPSGTD 285
+R L+++ +A+ +P+ F+SLVG+ LG + PA + L G +
Sbjct: 339 LRWLLVMVVGLMAMLVPNFADFLSLVGSSVCVLLGFVLPAAFHLKVFGAE 388
>01_01_0113 + 842543-843191,844964-844987,845202-846274
Length = 581
Score = 31.5 bits (68), Expect = 0.58
Identities = 17/70 (24%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Frame = -3
Query: 311 PIETSQAVRSVPEGNSFHNAGKIN--PRNDKQTAPTKEMNGPRSGIAIAMQTVITIKAIL 138
P++ + + +P S+ G+IN N K+TA +GPR + A +V T +
Sbjct: 177 PLDCTVISKGIPMPYSYDKKGRINWDTSNFKETANRVINDGPRVTLVAATSSVATFVILS 236
Query: 137 MLYSARFFLA 108
++ + F+++
Sbjct: 237 LVVATAFYIS 246
>10_08_0001 +
13984436-13984514,13984804-13984926,13985181-13985468,
13985560-13985690,13985764-13985979,13986059-13986442
Length = 406
Score = 31.1 bits (67), Expect = 0.77
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = +1
Query: 145 ALIVMTVCIAIAIPDLGPFISLVGAVCLSFLGLIFPAL 258
A +V+ I+ A+P G F+S+ GAV + L + PAL
Sbjct: 312 AYMVVITLISAAMPFFGDFVSVCGAVGFTPLDFVLPAL 349
>07_01_0248 -
1821340-1821996,1823619-1823761,1824239-1824453,
1825911-1826049,1826152-1826385,1826504-1826624
Length = 502
Score = 31.1 bits (67), Expect = 0.77
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +1
Query: 139 RIALIVMTVCIAIAIPDLGPFISLVGAVCLSFLGLIFP 252
R A +V+T A+A P F+ L+GAV L + FP
Sbjct: 409 RTAYVVLTAVAAMAFPFFNDFLGLIGAVSFWPLTVYFP 446
>06_01_0872 + 6687849-6687864,6689622-6690235,6690927-6691478
Length = 393
Score = 29.9 bits (64), Expect = 1.8
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = +1
Query: 133 SIRIALIVMTVCIAIAIPDLGPFISLVGAVCLSFLGLIFP 252
S+R AL+V T +A+A+P ++L G+ + ++ P
Sbjct: 305 SVRTALVVSTTAVALAVPFFAYVVALTGSFLSATATMLLP 344
>12_01_0522 - 4143921-4144556,4144656-4144798,4144903-4145551
Length = 475
Score = 29.5 bits (63), Expect = 2.3
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +1
Query: 139 RIALIVMTVCIAIAIPDLGPFISLVGAVCLSFLGLIFPALWKLLPSGTDR 288
R A + +T +A+ +P G + L+GAV L + FP + G R
Sbjct: 384 RSAFVCLTTVVAMLLPFFGNVVGLLGAVSFWPLTVYFPVEMYIAQRGVPR 433
>12_01_0520 + 4120030-4120678,4120783-4120925,4121025-4121660
Length = 475
Score = 29.5 bits (63), Expect = 2.3
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +1
Query: 139 RIALIVMTVCIAIAIPDLGPFISLVGAVCLSFLGLIFPALWKLLPSGTDR 288
R A + +T +A+ +P G + L+GAV L + FP + G R
Sbjct: 384 RSAFVCLTTVVAMLLPFFGNVVGLLGAVSFWPLTVYFPVEMYIAQRGVPR 433
>04_04_0125 + 22944505-22944556,22944665-22945363,22946445-22946947
Length = 417
Score = 28.7 bits (61), Expect = 4.1
Identities = 13/54 (24%), Positives = 28/54 (51%)
Frame = +1
Query: 91 VRHWFGAKKNLAEYSIRIALIVMTVCIAIAIPDLGPFISLVGAVCLSFLGLIFP 252
+R G ++R L++ TV +A+A+P ++LVG++ + ++ P
Sbjct: 316 IRGAAGKGARAVSVAVRTLLVLSTVAVALALPFFADLMALVGSMLNVAVCMLLP 369
>02_01_0225 -
1469295-1469733,1472352-1472767,1473603-1473658,
1473827-1473995
Length = 359
Score = 28.3 bits (60), Expect = 5.4
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -2
Query: 216 PD*RNEWSKIRNSYSDANRHHNQSDPDAVFGKILLSSKP 100
P ++ S S +N +N SDPD F + + S+KP
Sbjct: 100 PGSQSRTSAAAGSSGPSNFRYNPSDPDDFFAEFMASNKP 138
>03_02_0672 -
10325935-10326150,10326308-10326400,10326568-10326708,
10326828-10326893,10327099-10327359
Length = 258
Score = 27.9 bits (59), Expect = 7.1
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -2
Query: 159 HHNQSDPDAVFGKILLSSKPVTD 91
+H Q + ++ FGK+ L KPVTD
Sbjct: 125 NHKQREWESCFGKLNLDPKPVTD 147
>02_01_0246 + 1617326-1617367,1618903-1624419,1625040-1625498,
1625603-1625887,1626016-1626030,1626339-1626419,
1626909-1627322,1627423-1627719,1627801-1629864
Length = 3057
Score = 27.9 bits (59), Expect = 7.1
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = -3
Query: 356 PENTEGDHEYVFPENPIETSQAVRSVPEGNSFHNAGKINPRNDKQ 222
P+ TEG+ E++ P+ + V EGN+ A KI +K+
Sbjct: 2890 PKETEGNQEFMAITEPVIKEENVHETVEGNT--QAVKIKSNEEKE 2932
>01_06_1541 -
38127014-38128022,38128116-38128209,38128302-38128535,
38128643-38128744,38130893-38130956
Length = 500
Score = 27.9 bits (59), Expect = 7.1
Identities = 12/44 (27%), Positives = 23/44 (52%)
Frame = +1
Query: 121 LAEYSIRIALIVMTVCIAIAIPDLGPFISLVGAVCLSFLGLIFP 252
L + +R A + +T +++ +P + L+GAV L + FP
Sbjct: 401 LCKLVLRTAFVAVTTVVSLVLPFFNAVLGLLGAVAFWPLTVYFP 444
>11_01_0597 + 4769748-4770166,4770263-4770545,4770725-4771360
Length = 445
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/50 (28%), Positives = 23/50 (46%)
Frame = +1
Query: 139 RIALIVMTVCIAIAIPDLGPFISLVGAVCLSFLGLIFPALWKLLPSGTDR 288
R A + T +++ +P G + L+GAV L + FP + G R
Sbjct: 354 RTAFVCATTVVSMLLPFFGDVVGLLGAVSFWPLTVYFPVEMYIAQRGVRR 403
>05_01_0143 - 944169-947273
Length = 1034
Score = 27.5 bits (58), Expect = 9.4
Identities = 20/72 (27%), Positives = 31/72 (43%)
Frame = -3
Query: 350 NTEGDHEYVFPENPIETSQAVRSVPEGNSFHNAGKINPRNDKQTAPTKEMNGPRSGIAIA 171
N GDH EN + S + S+ EGNS K N TA T ++ +
Sbjct: 572 NDPGDHNAKKEENEQDLSISDESISEGNSEQKINKAG--NSCITADTAPISRKVDEVGDQ 629
Query: 170 MQTVITIKAILM 135
+ +I ++ +LM
Sbjct: 630 EENMIKLQQLLM 641
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,109,137
Number of Sequences: 37544
Number of extensions: 358394
Number of successful extensions: 807
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 792
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 807
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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