Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1705
(637 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g11900.1 68416.m01459 amino acid transporter family protein l... 42 3e-04
At4g38250.1 68417.m05402 amino acid transporter family protein l... 41 6e-04
At2g42005.1 68415.m05196 amino acid transporter family protein l... 41 6e-04
At5g65990.1 68418.m08308 amino acid transporter family protein s... 39 0.002
At5g01240.2 68418.m00032 amino acid permease, putative strong si... 37 0.010
At5g01240.1 68418.m00031 amino acid permease, putative strong si... 37 0.010
At2g38120.1 68415.m04679 amino acid permease, putative (AUX1) id... 37 0.013
At1g77690.1 68414.m09046 amino acid permease, putative similar t... 36 0.023
At2g41190.1 68415.m05087 amino acid transporter family protein l... 35 0.052
At2g21050.1 68415.m02499 amino acid permease, putative similar t... 35 0.052
At2g39130.1 68415.m04807 amino acid transporter family protein b... 31 0.64
At5g02170.1 68418.m00138 amino acid transporter family protein b... 31 0.85
At3g56200.1 68416.m06246 amino acid transporter family protein l... 31 0.85
At5g02180.1 68418.m00139 amino acid transporter family protein b... 29 2.0
At2g40420.1 68415.m04985 amino acid transporter family protein s... 29 2.6
At1g61270.1 68414.m06905 lysine and histidine specific transport... 29 2.6
At3g54830.1 68416.m06074 amino acid transporter family protein b... 29 3.4
At4g18200.1 68417.m02705 purine permease family protein similar ... 28 4.5
At5g49630.1 68418.m06141 amino acid permease 6 (AAP6) identical ... 27 7.9
At4g25500.2 68417.m03674 arginine/serine-rich splicing factor RS... 27 7.9
At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RS... 27 7.9
At1g03010.1 68414.m00273 phototropic-responsive NPH3 family prot... 27 7.9
>At3g11900.1 68416.m01459 amino acid transporter family protein low
similarity to proton/amino acid transporter 1 [Mus
musculus] GI:21908024; belongs to INTERPRO:IPR002422
amino acid/polyamine transporter, family II
Length = 432
Score = 42.3 bits (95), Expect = 3e-04
Identities = 21/68 (30%), Positives = 32/68 (47%)
Frame = +1
Query: 106 GAKKNLAEYSIRIALIVMTVCIAIAIPDLGPFISLVGAVCLSFLGLIFPALWKLLPSGTD 285
G+ A ++ R L+V IA +P G F SLVG+ + + + PA + L G
Sbjct: 342 GSVSKFAIFTTRTLLVVGLAAIASLVPGFGTFASLVGSTLCALISFVLPASYHLTLLGPS 401
Query: 286 RTAWDVSI 309
W+ SI
Sbjct: 402 LNVWNKSI 409
>At4g38250.1 68417.m05402 amino acid transporter family protein low
similarity to lysosomal amino acid transporter 1 [Rattus
norvegicus] GI:14571904; contains Pfam profile PF01490:
Transmembrane amino acid transporter protein
Length = 436
Score = 41.1 bits (92), Expect = 6e-04
Identities = 24/87 (27%), Positives = 42/87 (48%)
Frame = +1
Query: 10 VKLMIATAIFFTYSLQFYVPMEIIWNNVRHWFGAKKNLAEYSIRIALIVMTVCIAIAIPD 189
V+L + +FFT+ L EI+ + + +R L++ +A+ +P+
Sbjct: 315 VQLGLCINLFFTFPLMMNPVFEIVERRF------SRGMYSAWLRWVLVLAVTLVALFVPN 368
Query: 190 LGPFISLVGAVCLSFLGLIFPALWKLL 270
F+SLVG+ LG + PAL+ LL
Sbjct: 369 FADFLSLVGSSTCCVLGFVLPALFHLL 395
>At2g42005.1 68415.m05196 amino acid transporter family protein low
similarity to proton/amino acid transporter 1 [Mus
musculus] GI:21908024; contains Pfam profile PF01490:
Transmembrane amino acid transporter protein
Length = 413
Score = 41.1 bits (92), Expect = 6e-04
Identities = 25/87 (28%), Positives = 44/87 (50%)
Frame = +1
Query: 10 VKLMIATAIFFTYSLQFYVPMEIIWNNVRHWFGAKKNLAEYSIRIALIVMTVCIAIAIPD 189
V+L + +FFT+ L EI+ R W G + +R L++ +A+ +P+
Sbjct: 294 VQLGLCINLFFTFPLMMNPVFEIVER--RFWSG----MYCVWLRWLLVLAVTLVALLVPN 347
Query: 190 LGPFISLVGAVCLSFLGLIFPALWKLL 270
F+SLVG+ LG + P+L+ L+
Sbjct: 348 FADFLSLVGSSVCCALGFVLPSLFHLM 374
>At5g65990.1 68418.m08308 amino acid transporter family protein
similar to proton/amino acid transporter 1 [Mus
musculus] GI:21908024; contains Pfam profile PF01490:
Transmembrane amino acid transporter protein
Length = 427
Score = 39.1 bits (87), Expect = 0.002
Identities = 23/86 (26%), Positives = 46/86 (53%)
Frame = +1
Query: 10 VKLMIATAIFFTYSLQFYVPMEIIWNNVRHWFGAKKNLAEYSIRIALIVMTVCIAIAIPD 189
V+L +A +FFT+ L E++ R ++ ++ +R A +++ +A+ +P+
Sbjct: 306 VQLGLAINLFFTFPLMMQPVYEVV---ERRLCSSRYSVW---VRWATVLVVTLVALLVPN 359
Query: 190 LGPFISLVGAVCLSFLGLIFPALWKL 267
F+SLVG+ LG + P+L+ L
Sbjct: 360 FADFLSLVGSSVCVVLGFVLPSLFHL 385
>At5g01240.2 68418.m00032 amino acid permease, putative strong
similarity to AUX1 GI:1531758 from [Arabidopsis
thaliana]; contains Pfam profile PF01490: Transmembrane
amino acid transporter protein
Length = 408
Score = 37.1 bits (82), Expect = 0.010
Identities = 24/76 (31%), Positives = 35/76 (46%)
Frame = +1
Query: 67 PMEIIWNNVRHWFGAKKNLAEYSIRIALIVMTVCIAIAIPDLGPFISLVGAVCLSFLGLI 246
P+ +W K +R+ ++V +AI P GP S VGA+ ++F I
Sbjct: 258 PLYFVWEKAIGMHHTKSLCLRALVRLPVVVPIWFLAIIFPFFGPINSAVGALLVTFTVYI 317
Query: 247 FPALWKLLPSGTDRTA 294
PAL +L T RTA
Sbjct: 318 IPALAHML---TYRTA 330
>At5g01240.1 68418.m00031 amino acid permease, putative strong
similarity to AUX1 GI:1531758 from [Arabidopsis
thaliana]; contains Pfam profile PF01490: Transmembrane
amino acid transporter protein
Length = 488
Score = 37.1 bits (82), Expect = 0.010
Identities = 24/76 (31%), Positives = 35/76 (46%)
Frame = +1
Query: 67 PMEIIWNNVRHWFGAKKNLAEYSIRIALIVMTVCIAIAIPDLGPFISLVGAVCLSFLGLI 246
P+ +W K +R+ ++V +AI P GP S VGA+ ++F I
Sbjct: 338 PLYFVWEKAIGMHHTKSLCLRALVRLPVVVPIWFLAIIFPFFGPINSAVGALLVTFTVYI 397
Query: 247 FPALWKLLPSGTDRTA 294
PAL +L T RTA
Sbjct: 398 IPALAHML---TYRTA 410
>At2g38120.1 68415.m04679 amino acid permease, putative (AUX1)
identical to AUX1 GI:1531758 from [Arabidopsis thaliana]
Length = 485
Score = 36.7 bits (81), Expect = 0.013
Identities = 20/68 (29%), Positives = 31/68 (45%)
Frame = +1
Query: 67 PMEIIWNNVRHWFGAKKNLAEYSIRIALIVMTVCIAIAIPDLGPFISLVGAVCLSFLGLI 246
P+ +W V K R+ +++ +AI P GP S VGA+ +SF I
Sbjct: 332 PLYFVWEKVIGMHDTKSICLRALARLPVVIPIWFLAIIFPFFGPINSAVGALLVSFTVYI 391
Query: 247 FPALWKLL 270
P+L +L
Sbjct: 392 IPSLAHML 399
>At1g77690.1 68414.m09046 amino acid permease, putative similar to
AUX1 (regulator of root gravitropism, putative permease)
GI:1531758 GB:CAA67308 from [Arabidopsis thaliana];
contains Pfam profile PF01490: Transmembrane amino acid
transporter protein
Length = 470
Score = 35.9 bits (79), Expect = 0.023
Identities = 20/68 (29%), Positives = 31/68 (45%)
Frame = +1
Query: 67 PMEIIWNNVRHWFGAKKNLAEYSIRIALIVMTVCIAIAIPDLGPFISLVGAVCLSFLGLI 246
P+ +W + K R+ ++V +AI P GP S VG++ +SF I
Sbjct: 330 PLYFVWEKLIGVHETKSMFKRAMARLPVVVPIWFLAIIFPFFGPINSAVGSLLVSFTVYI 389
Query: 247 FPALWKLL 270
PAL +L
Sbjct: 390 IPALAHML 397
>At2g41190.1 68415.m05087 amino acid transporter family protein low
similarity to vesicular GABA transporter [Rattus
norvegicus] GI:2587061; belongs to INTERPRO:IPR002422
amino acid/polyamine transporter, family II
Length = 536
Score = 34.7 bits (76), Expect = 0.052
Identities = 15/41 (36%), Positives = 25/41 (60%)
Frame = +1
Query: 136 IRIALIVMTVCIAIAIPDLGPFISLVGAVCLSFLGLIFPAL 258
+R AL+ +VC A IP G ++L+G++ + +I PAL
Sbjct: 451 LRTALVASSVCSAFLIPFFGLMMALIGSLLSILVAIIMPAL 491
>At2g21050.1 68415.m02499 amino acid permease, putative similar to
AUX1 [Arabidopsis thaliana] GI:1531758; contains Pfam
profile PF01490: Transmembrane amino acid transporter
protein
Length = 483
Score = 34.7 bits (76), Expect = 0.052
Identities = 17/64 (26%), Positives = 30/64 (46%)
Frame = +1
Query: 67 PMEIIWNNVRHWFGAKKNLAEYSIRIALIVMTVCIAIAIPDLGPFISLVGAVCLSFLGLI 246
P+ +W + + + R+ +++ +AI P GP S VG++ +SF I
Sbjct: 326 PLYFVWEKLIGMHECRSMCKRAAARLPVVIPIWFLAIIFPFFGPINSTVGSLLVSFTVYI 385
Query: 247 FPAL 258
PAL
Sbjct: 386 IPAL 389
>At2g39130.1 68415.m04807 amino acid transporter family protein
belongs to INTERPRO:IPR002422 amino acid/polyamine
transporter, family II
Length = 550
Score = 31.1 bits (67), Expect = 0.64
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +1
Query: 136 IRIALIVMTVCIAIAIPDLGPFISLVGAVCLSFLGLIFP 252
IR L+ T+ + +AIP G +SL+G++ + LI P
Sbjct: 464 IRTLLVFSTLLVGLAIPFFGLVMSLIGSLLTMLVTLILP 502
>At5g02170.1 68418.m00138 amino acid transporter family protein
belongs to INTERPRO:IPR002422 amino acid/polyamine
transporter, family II
Length = 526
Score = 30.7 bits (66), Expect = 0.85
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +1
Query: 139 RIALIVMTVCIAIAIPDLGPFISLVGAVCLSFLGLIFPAL 258
R L++ T+ +A+ +P +L+G+ + LIFP L
Sbjct: 442 RTILVLSTLVVALTVPFFATVAALIGSFIAMLIALIFPCL 481
>At3g56200.1 68416.m06246 amino acid transporter family protein low
similarity to N system amino acids transporter NAT-1
[Mus musculus] GI:7406950; belongs to INTERPRO:IPR002422
amino acid/polyamine transporter, family II
Length = 435
Score = 30.7 bits (66), Expect = 0.85
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +1
Query: 136 IRIALIVMTVCIAIAIPDLGPFISLVGAVCLSFLGLIFPA 255
+ +AL++ AIA+PD+ F +G+ + IFPA
Sbjct: 352 LTLALLICCFLSAIAVPDIWYFFQFMGSTITVSIAFIFPA 391
>At5g02180.1 68418.m00139 amino acid transporter family protein
belongs to INTERPRO:IPR002422 amino acid/polyamine
transporter, family II
Length = 550
Score = 29.5 bits (63), Expect = 2.0
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +1
Query: 139 RIALIVMTVCIAIAIPDLGPFISLVGAVCLSFLGLIFPAL 258
R L+ T+ +A+++P +L+G+ + LIFP L
Sbjct: 465 RTMLVTSTLVVALSVPFFAIVAALIGSFLAMLVALIFPCL 504
>At2g40420.1 68415.m04985 amino acid transporter family protein
similar to neuronal glutamine transporter [Rattus
norvegicus] GI:6978016; contains Pfam profile PF01490:
Transmembrane amino acid transporter protein
Length = 440
Score = 29.1 bits (62), Expect = 2.6
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +1
Query: 130 YSIRIALIVMTVCIAIAIPDLGPFISLVGAVCLSFLGLIFPA 255
+++ L++ AIAIPD+ F +G+ + IFPA
Sbjct: 352 FALTFPLLISCFLGAIAIPDIWYFFQFLGSTSTVSIAFIFPA 393
>At1g61270.1 68414.m06905 lysine and histidine specific transporter,
putative similar to lysine and histidine specific
transporter GI:2576361 from [Arabidopsis thaliana];
contains Pfam profile PF01490: Transmembrane amino acid
transporter protein
Length = 451
Score = 29.1 bits (62), Expect = 2.6
Identities = 13/61 (21%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Frame = +1
Query: 91 VRHWFGAKKNLAEYSIRIALIVMTVCIAIAIPDLGPFISLVGAVCLSFLGLIFPA-LWKL 267
++ W + + ++IR + T+ IA+A+P +S G + P +W +
Sbjct: 342 IKKWHFSPTRVLRFTIRWTFVAATMGIAVALPHFSALLSFFGGFIFAPTTYFIPCIIWLI 401
Query: 268 L 270
L
Sbjct: 402 L 402
>At3g54830.1 68416.m06074 amino acid transporter family protein
belongs to INTERPRO:IPR002422 amino acid/polyamine
transporter, family II
Length = 546
Score = 28.7 bits (61), Expect = 3.4
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +1
Query: 112 KKNLAEYSIRIALIVMTVCIAIAIPDLGPFISLVGA 219
K +IR AL + T+ + +AIP G +SL+G+
Sbjct: 453 KSRFYAIAIRSALAISTLLVGLAIPFFGLVMSLIGS 488
>At4g18200.1 68417.m02705 purine permease family protein similar to
purine permease [Arabidopsis thaliana] GI:7620007;
contains Pfam profile PF03151: Domain of unknown
function, DUF250
Length = 1128
Score = 28.3 bits (60), Expect = 4.5
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = +1
Query: 154 VMTVCIAIAIPDLGPFISLVGAVCLSFLGLIFPALWKLLPS 276
V T + A+ DL + SLV A C+ +GL W+ LPS
Sbjct: 980 VFTKHTSSAVLDLANYQSLV-ATCVVLIGLFASGEWRTLPS 1019
Score = 27.5 bits (58), Expect = 7.9
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = +1
Query: 154 VMTVCIAIAIPDLGPFISLVGAVCLSFLGLIFPALWKLLPS 276
V T + A+ DL + SLV A C+ +GL W+ LPS
Sbjct: 605 VFTKHTSSAVTDLAIYQSLV-ASCVVLIGLFASGEWETLPS 644
>At5g49630.1 68418.m06141 amino acid permease 6 (AAP6) identical to
amino acid permease 6 (AAP6) [Arabidopsis thaliana]
GI:1769887
Length = 481
Score = 27.5 bits (58), Expect = 7.9
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +1
Query: 139 RIALIVMTVCIAIAIPDLGPFISLVGAVCLSFLGLIFP 252
R + +V+T +A+ P F+ L+GA L + FP
Sbjct: 389 RTSYVVVTAVVAMIFPFFNDFLGLIGAASFWPLTVYFP 426
>At4g25500.2 68417.m03674 arginine/serine-rich splicing factor RSP40
(RSP40) identical to SP|P92965 Arginine/serine-rich
splicing factor RSP40 {Arabidopsis thaliana}
Length = 309
Score = 27.5 bits (58), Expect = 7.9
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 5/49 (10%)
Frame = -3
Query: 317 ENPIETSQAVRSVPEGNSFHNAGKINPRN-----DKQTAPTKEMNGPRS 186
E+PIE + RS PE + G I R+ D +P ++ PRS
Sbjct: 256 ESPIERRERSRSSPENGQVESPGSIGRRDSDGGYDGAESPMQKSRSPRS 304
>At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RSP40
(RSP40) identical to SP|P92965 Arginine/serine-rich
splicing factor RSP40 {Arabidopsis thaliana}
Length = 350
Score = 27.5 bits (58), Expect = 7.9
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 5/49 (10%)
Frame = -3
Query: 317 ENPIETSQAVRSVPEGNSFHNAGKINPRN-----DKQTAPTKEMNGPRS 186
E+PIE + RS PE + G I R+ D +P ++ PRS
Sbjct: 297 ESPIERRERSRSSPENGQVESPGSIGRRDSDGGYDGAESPMQKSRSPRS 345
>At1g03010.1 68414.m00273 phototropic-responsive NPH3 family protein
contains NPH3 family domain, Pfam:PF03000
Length = 634
Score = 27.5 bits (58), Expect = 7.9
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Frame = -1
Query: 325 FFQRTQLKRPKPFGRSQKVTVSIM---QGRSIRGMISRQPRLKK*MVQDPE 182
FFQR + K G Q V I+ +S++G+I R P+L+K V D E
Sbjct: 218 FFQRV-ISAVKSKGLIQDVISKILISYTNKSLQGLIVRDPKLEKERVLDSE 267
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,337,742
Number of Sequences: 28952
Number of extensions: 307742
Number of successful extensions: 886
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 863
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 886
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1305036432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -