Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1704
         (657 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9DHH3 Cluster: 140R protein; n=1; Yaba-like disease vi...    33   4.6  
UniRef50_UPI0000DAE566 Cluster: hypothetical protein Rgryl_01000...    33   6.0  
UniRef50_UPI00015BCEB8 Cluster: UPI00015BCEB8 related cluster; n...    33   8.0  

>UniRef50_Q9DHH3 Cluster: 140R protein; n=1; Yaba-like disease
           virus|Rep: 140R protein - Yaba-like disease virus (YLDV)
          Length = 570

 Score = 33.5 bits (73), Expect = 4.6
 Identities = 14/36 (38%), Positives = 25/36 (69%), Gaps = 3/36 (8%)
 Frame = +1

Query: 358 ALHFTQKQIYLVQKQGYFYFINYLKYFK---NNWKR 456
           AL    K+IY++  +GY+ ++N ++Y+K   N+WKR
Sbjct: 345 ALVSNNKKIYVIGGKGYYKYVNSVEYWKPGFNSWKR 380


>UniRef50_UPI0000DAE566 Cluster: hypothetical protein
           Rgryl_01000625; n=1; Rickettsiella grylli|Rep:
           hypothetical protein Rgryl_01000625 - Rickettsiella
           grylli
          Length = 628

 Score = 33.1 bits (72), Expect = 6.0
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = +1

Query: 343 LVLRIALHFTQKQIYLVQKQGYFYFINYLKYFKNNWK 453
           ++ R+AL +  K++  ++K G   FINY   FK +W+
Sbjct: 516 ILKRLALKYMPKELIFIKKYGCGSFINYHGKFKTSWR 552


>UniRef50_UPI00015BCEB8 Cluster: UPI00015BCEB8 related cluster; n=1;
           unknown|Rep: UPI00015BCEB8 UniRef100 entry - unknown
          Length = 275

 Score = 32.7 bits (71), Expect = 8.0
 Identities = 25/95 (26%), Positives = 42/95 (44%), Gaps = 1/95 (1%)
 Frame = +1

Query: 295 MNY*NT*VDDIVTFANLVLRIALHFTQKQIYLVQKQGYFYFINYLKYFKNNWKRCSKPTH 474
           MN+ N   +D+V + + + R+  +  +K   +  K   +  IN   Y   +W    K  H
Sbjct: 1   MNFINVIFEDVVCYDDYLERLQKYLFEKGYIISSKAKNYIIINKENYNPLDW---DKLLH 57

Query: 475 FFIFCCP-CLKLLYFSGDLFQIKSPQKCFLNPTSY 576
             +   P  L+L Y   DL QIK    C++  T +
Sbjct: 58  LEVRQKPLILRLFYLDKDLEQIKD---CYIKQTPF 89


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 550,694,235
Number of Sequences: 1657284
Number of extensions: 9828274
Number of successful extensions: 15365
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 14931
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15358
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 49586781480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)