Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1704
         (657 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_1173 + 11092482-11093465,11093552-11093914                       29   2.5  
10_01_0133 + 1621574-1625779                                           28   7.5  

>07_01_1173 + 11092482-11093465,11093552-11093914
          Length = 448

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = +1

Query: 463 KPTHFFIFCCPCLKLLYFSGDLFQIKSPQ--KC 555
           KP   F+ C PCL+ LY +  +F+ +S +  KC
Sbjct: 310 KPVVDFLRCFPCLEALYITSHMFEPRSMETLKC 342


>10_01_0133 + 1621574-1625779
          Length = 1401

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 442  NNWKRCSKPTHFFIFCCPCLKLLYFSGDLFQIKSPQKCFLNPTSYSA*MVKIIYWTLGTS 621
            N W   S+     +  CP LK L FS DL  +++P     +       ++++I W   TS
Sbjct: 942  NTWHLFSQLEQVKVSNCPVLKELPFSHDLKLLQTPDAQERHIFRPDLQILRVIGWR--TS 999

Query: 622  LAAPV 636
             A+PV
Sbjct: 1000 QASPV 1004


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,037,111
Number of Sequences: 37544
Number of extensions: 240804
Number of successful extensions: 287
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 281
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 287
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)