Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1704
         (657 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59750| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.27 
SB_13929| Best HMM Match : VKOR (HMM E-Value=0.65)                     33   0.27 
SB_28495| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_27593| Best HMM Match : AdoMet_Synthase (HMM E-Value=0.53)          28   7.7  

>SB_59750| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 607

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = +1

Query: 490 CPCLKLLYF-SGDLFQIKSPQKCFLNPTSYSA*MVKIIYWTLGTSLAAPVRLPR 648
           C  L+LL   SGDL Q     +  LNP  +   +    +W+   S   P+R PR
Sbjct: 239 CRLLRLLLLPSGDLVQHLPASQSMLNPIKHEGGLCSTQWWSYTLSSPEPIRRPR 292


>SB_13929| Best HMM Match : VKOR (HMM E-Value=0.65)
          Length = 498

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = +1

Query: 511 YFSGDLFQIKSPQKCFLNPTSYSA*MVKIIYWTLGTSLAAPVRLPR 648
           +  G  F I  P +  LNP  +   +    +W+   SL  P+R PR
Sbjct: 344 FLRGTSFNICQPSQSMLNPIKHEGGLCSTQWWSYTLSLPEPIRRPR 389


>SB_28495| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6753

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = +1

Query: 406  YFYFINYLKYFKNNWKR-CSKPTHF-FIFCCPCLKLLYFSGDL 528
            Y+  +NY    KN+W + C+  +HF F F   C +   F G L
Sbjct: 5480 YYVVLNYSPRAKNDWSQTCAFSSHFSFDFTSSCEEYFRFWGAL 5522


>SB_27593| Best HMM Match : AdoMet_Synthase (HMM E-Value=0.53)
          Length = 794

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/36 (30%), Positives = 22/36 (61%)
 Frame = +1

Query: 499 LKLLYFSGDLFQIKSPQKCFLNPTSYSA*MVKIIYW 606
           ++L +FS +LF +   + C  N  ++S+  + II+W
Sbjct: 367 IELNFFSKELFNLLKREICRRNQRTFSSHDISIIFW 402


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,227,660
Number of Sequences: 59808
Number of extensions: 311323
Number of successful extensions: 380
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 356
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 380
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)