Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1703
         (716 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1709.11c |png2||ING family homolog Png2|Schizosaccharomyces ...    29   0.66 
SPCC1223.09 |||uricase |Schizosaccharomyces pombe|chr 3|||Manual       27   3.5  
SPAC1786.03 |cut11|SPAC24C9.01|integral membrane nucleoporin|Sch...    26   4.7  
SPAC22G7.08 |ppk8||serine/threonine protein kinase Ppk8 |Schizos...    26   4.7  
SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4 |Schizosac...    26   6.2  
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos...    26   6.2  
SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr...    25   8.2  

>SPBC1709.11c |png2||ING family homolog Png2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 305

 Score = 29.1 bits (62), Expect = 0.66
 Identities = 18/67 (26%), Positives = 33/67 (49%)
 Frame = -2

Query: 451 LPQIHNAVTPLTTFHIRVTRTHKHTYVS*TMKVKSS*ALYNHYDLSQIQNAVTPLTTFHI 272
           L   H+ VTP T+   R TR H++   S     +   + YN++     ++A +P +++H 
Sbjct: 129 LMNYHSTVTPQTSERRRETRRHQNNQHSQQYSSQERSSSYNNF-----EDASSPQSSYHT 183

Query: 271 RVTRTQN 251
              R +N
Sbjct: 184 PTKRRKN 190


>SPCC1223.09 |||uricase |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 296

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 11/47 (23%), Positives = 24/47 (51%)
 Frame = -1

Query: 143 IRAFVFKHTYVLLK*YTLMDTLMDILYKRHFYNITRKPFKV*NLEKN 3
           ++A ++K    ++  Y  ++ +   L  +H++ I   PF + NL  N
Sbjct: 229 VQATMYKMADTIINTYPAINEVYYALPNKHYFEINLAPFNIDNLGSN 275


>SPAC1786.03 |cut11|SPAC24C9.01|integral membrane
           nucleoporin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +2

Query: 44  CCKNVAYTRYPLMYPL 91
           CC+ +AYT+ P  +PL
Sbjct: 236 CCRRIAYTKTPPKWPL 251


>SPAC22G7.08 |ppk8||serine/threonine protein kinase Ppk8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = -1

Query: 164 TPLTTFHIRAFVFKHTYVLLK*YTLMDTLMDILYKRH 54
           T L   ++R F+ ++T+     +  +  ++DI+YKRH
Sbjct: 278 TSLLRRYVRYFIAEYTFASTLRHPNIIKVLDIIYKRH 314


>SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 446

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 11/46 (23%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = -1

Query: 383 TYVCE-LNYESKIFISALQSLRLISNTECSYTTDNISHKGYTYTKH 249
           T +C+   ++ K  ++ +  + +++NT+  +   +I    Y YTKH
Sbjct: 14  TLICKTFRHDLKKSVTEIFRVAILTNTDYRHPIVSIGSSTYIYTKH 59


>SPBC119.07 |ppk19||serine/threonine protein kinase
            Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1706

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = -1

Query: 425  TTDNISHKGHTYT*TYVCELNYESKIFISALQS 327
            TT     K  +YT T  C LNY +KI+  A  S
Sbjct: 1128 TTRQNGAKKSSYTGTNPCVLNYLNKIYAEAAAS 1160


>SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 553

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = -3

Query: 711 LCNLRRVLLVLPSTVRCF*LNFN*VYSLKIAEEVFCCDNFFSN 583
           L N++ +  ++PS   C  + F  +YS +I    F C  F  N
Sbjct: 9   LYNIKNIRPLIPSFHVCLLIMFLILYSQEILSFFFMCSKFSMN 51


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,690,958
Number of Sequences: 5004
Number of extensions: 50939
Number of successful extensions: 117
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)