Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1703
(716 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_3417| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.076
SB_56787| Best HMM Match : Keratin_B2 (HMM E-Value=0.34) 34 0.10
SB_51311| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.31
SB_4795| Best HMM Match : CLN3 (HMM E-Value=0.058) 32 0.40
SB_39292| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.53
SB_11118| Best HMM Match : PSI (HMM E-Value=7.7) 32 0.53
SB_28919| Best HMM Match : Ribosomal_S5 (HMM E-Value=0.79) 31 1.2
SB_4812| Best HMM Match : Sulfatase (HMM E-Value=0) 30 2.2
SB_25952| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_27928| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_54795| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.0
SB_242| Best HMM Match : AFP (HMM E-Value=0.45) 29 5.0
SB_38959| Best HMM Match : EGF (HMM E-Value=0.14) 28 6.6
SB_50705| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_24004| Best HMM Match : EGF (HMM E-Value=5.7e-14) 28 6.6
SB_4088| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_11801| Best HMM Match : DEAD (HMM E-Value=5e-05) 28 8.7
>SB_3417| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 332
Score = 34.7 bits (76), Expect = 0.076
Identities = 23/64 (35%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = -2
Query: 439 HNAVTPLTTFHIRVTRTHKHTYVS*TMKVKSS*ALYNHYDLSQIQNAVTPLTTF-HIRVT 263
HN VT + H VTRTH H V+ T +NH +++I N + HI VT
Sbjct: 206 HNMVTRIHN-HNMVTRTHNHNMVTRTHNHNMVTRAHNHNMVTRIHNHIMVTRIHNHIMVT 264
Query: 262 RTQN 251
R N
Sbjct: 265 RIHN 268
Score = 31.9 bits (69), Expect = 0.53
Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Frame = -2
Query: 439 HNAVTPLTTFHIRVTRTHKHTYVS*TMKVKSS*ALYNHYDLSQI--QNAVTPLTTFHIRV 266
HN VT + H VTR H H V+ T ++NH +++I N VT + H V
Sbjct: 143 HNMVTRIHN-HNMVTRAHNHNMVTRTHNHNMVTRIHNHNMVTRIHNHNMVTRIHN-HNMV 200
Query: 265 TRTQNIRM 242
TR N M
Sbjct: 201 TRAHNHNM 208
Score = 30.7 bits (66), Expect = 1.2
Identities = 22/67 (32%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Frame = -2
Query: 439 HNAVTPLTTFHIRVTRTHKHTYVS*TMKVKSS*ALYNHYDLSQIQN-AVTPLTTFHIRVT 263
HN VT HI VTR H H V+ ++NH +++ N + HI VT
Sbjct: 71 HNMVTSRHN-HIMVTRAHNHIMVTRIHNHNMVTRIHNHNMVTRTHNHNMVTRAHNHIMVT 129
Query: 262 RTQNIRM 242
R N M
Sbjct: 130 RAHNHNM 136
Score = 29.9 bits (64), Expect = 2.2
Identities = 22/67 (32%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Frame = -2
Query: 439 HNAVTPLTTFHIRVTRTHKHTYVS*TMKVKSS*ALYNHYDLSQIQN-AVTPLTTFHIRVT 263
HN VT HI VTR H H V+ ++NH +++ N + T H VT
Sbjct: 116 HNMVTRAHN-HIMVTRAHNHNMVTRIHNHNMVTRIHNHNMVTRAHNHNMVTRTHNHNMVT 174
Query: 262 RTQNIRM 242
R N M
Sbjct: 175 RIHNHNM 181
Score = 28.7 bits (61), Expect = 5.0
Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Frame = -2
Query: 445 QIHNAVTPLTTF-HIRVTRTHKHTYVS*TMKVKSS*ALYNHYDLSQI--QNAVTPLTTFH 275
+IHN + HI VTR H H V+ +NH +++I N VT + + H
Sbjct: 256 RIHNHIMVTRIHNHIMVTRAHNHNMVT---------RAHNHIMVTRIHNHNMVTRINS-H 305
Query: 274 IRVTRTQNIRM 242
I VTR N M
Sbjct: 306 IMVTRAHNHNM 316
>SB_56787| Best HMM Match : Keratin_B2 (HMM E-Value=0.34)
Length = 527
Score = 34.3 bits (75), Expect = 0.10
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = -2
Query: 445 QIHNAVTPLTTF-HIRVTRTHKHTYVS*TMKVKSS*ALYNHYDLSQIQNAVTPLTTFHIR 269
Q HN +T T HI VT H HT V+ + + +NH ++ + + P+TT H
Sbjct: 408 QGHNYITVTTCHNHITVTTCHNHTTVTKCLNHITVTTCHNHITVTTCHDHI-PVTTCHYH 466
Query: 268 VTRT 257
+T T
Sbjct: 467 ITVT 470
Score = 29.9 bits (64), Expect = 2.2
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Frame = -2
Query: 478 HKRFTIITPLPQIHNAVTPLTT--FHIRVTRTHKHTYVS*TMKVKSS*ALYNHYDLSQIQ 305
H T+ T H+ + P+TT +HI VT H H V+ + + +NH ++
Sbjct: 446 HNHITVTT----CHDHI-PVTTCHYHITVTTCHNHITVTKCLNHITVTTCHNHITVTTCH 500
Query: 304 NAVTPLTTFHIRVT 263
+ + P+TT H +T
Sbjct: 501 DHI-PVTTCHNHIT 513
>SB_51311| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 151
Score = 32.7 bits (71), Expect = 0.31
Identities = 21/73 (28%), Positives = 36/73 (49%)
Frame = -1
Query: 461 HYAFTSNTQCSYTTDNISHKGHTYT*TYVCELNYESKIFISALQSLRLISNTECSYTTDN 282
HYAFTSN YT + +T+T ++ + I S SL +I+ ++T++
Sbjct: 56 HYAFTSNHTFHYTFTSNHTFHYTFTSSHTFHYAFTKAIIPSTTPSLVIIT-FHYAFTSNR 114
Query: 281 ISHKGYTYTKHTY 243
H +T + HT+
Sbjct: 115 TFHYAFT-SNHTF 126
Score = 29.5 bits (63), Expect = 2.8
Identities = 36/124 (29%), Positives = 51/124 (41%), Gaps = 8/124 (6%)
Frame = -1
Query: 461 HYAFTSNTQCSY--TTDNISHKGHT--YT*TYVCELNYESKIFISALQSLR--LISNTEC 300
HYAFTSN Y T+++ H T +T Y N+ ++ + SN
Sbjct: 6 HYAFTSNHTFHYTFTSNHTFHYAFTSNHTFHYAFTSNHTFHYTFTSHHTFHYAFTSNHTF 65
Query: 299 SYTTDNISHKGYTYT-KHTY-VS*TMKVKPS*ALYNHYDLSQIHNAVTPLTTFHIRAFVF 126
YT + YT+T HT+ + T + PS + H A T TFH AF
Sbjct: 66 HYTFTSNHTFHYTFTSSHTFHYAFTKAIIPS--TTPSLVIITFHYAFTSNRTFHY-AFTS 122
Query: 125 KHTY 114
HT+
Sbjct: 123 NHTF 126
>SB_4795| Best HMM Match : CLN3 (HMM E-Value=0.058)
Length = 878
Score = 32.3 bits (70), Expect = 0.40
Identities = 23/82 (28%), Positives = 36/82 (43%)
Frame = -1
Query: 464 NHYAFTSNTQCSYTTDNISHKGHTYT*TYVCELNYESKIFISALQSLRLISNTECSYTTD 285
++Y T+ T+ SYT ++ G YT T NY + + + + T SYT
Sbjct: 429 SNYTITAYTESSYTMT--AYTGSNYTMTAHTGSNYTMTAYTGF--NYTMTAYTGSSYTMT 484
Query: 284 NISHKGYTYTKHTYVS*TMKVK 219
+ YT T HT + TM +
Sbjct: 485 AYTGSNYTMTAHTVSNYTMTAR 506
Score = 30.7 bits (66), Expect = 1.2
Identities = 25/79 (31%), Positives = 34/79 (43%)
Frame = -1
Query: 464 NHYAFTSNTQCSYTTDNISHKGHTYT*TYVCELNYESKIFISALQSLRLISNTECSYTTD 285
++Y T+ T+ SYT +H G YT T NY + + TE SYT
Sbjct: 399 SNYTMTAYTESSYTMT--AHTGSNYTMTAYTGSNYT------------ITAYTESSYTMT 444
Query: 284 NISHKGYTYTKHTYVS*TM 228
+ YT T HT + TM
Sbjct: 445 AYTGSNYTMTAHTGSNYTM 463
Score = 30.3 bits (65), Expect = 1.6
Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 3/80 (3%)
Frame = -1
Query: 458 YAFTSNTQCSYTTDNIS---HKGHTYT*TYVCELNYESKIFISALQSLRLISNTECSYTT 288
Y +S T +YT N + H G YT T NY + + ++ + + + T
Sbjct: 436 YTESSYTMTAYTGSNYTMTAHTGSNYTMTAYTGFNYTMTAYTGSSYTMTAYTGSNYTMTA 495
Query: 287 DNISHKGYTYTKHTYVS*TM 228
+S+ YT T T S TM
Sbjct: 496 HTVSN--YTMTARTGSSYTM 513
Score = 29.9 bits (64), Expect = 2.2
Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 3/80 (3%)
Frame = -1
Query: 458 YAFTSNTQCSYTTDNIS---HKGHTYT*TYVCELNYESKIFISALQSLRLISNTECSYTT 288
Y +NT +YT N + G +YT T NY + + + + + T +YT
Sbjct: 346 YTGYNNTMTAYTGSNYTMTARTGSSYTMTAYTGSNYTMTAYTGS--NYTMTAYTGSNYTM 403
Query: 287 DNISHKGYTYTKHTYVS*TM 228
+ YT T HT + TM
Sbjct: 404 TAYTESSYTMTAHTGSNYTM 423
>SB_39292| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 707
Score = 31.9 bits (69), Expect = 0.53
Identities = 25/124 (20%), Positives = 51/124 (41%), Gaps = 4/124 (3%)
Frame = -1
Query: 449 TSNTQCSYTTDNISHKGHTYT*TYVCELNYESKIFISALQSLRLISN----TECSYTTDN 282
T NT C++T + + T + + +L ++ N T C++T
Sbjct: 104 TLNTMCNHTLTTMCNHTLTTMCNHTRNTMCNHTLTTMCNHTLTIMCNHTLTTMCNHTLTT 163
Query: 281 ISHKGYTYTKHTYVS*TMKVKPS*ALYNHYDLSQIHNAVTPLTTFHIRAFVFKHTYVLLK 102
+ + T T H + TM +YNH ++ ++ +T + H+ ++ HT +
Sbjct: 164 MCNPALT-TMHNHTLTTMCNHTLTTMYNHALTTKCNHTLTTMCDHHVLTTMWNHTLTTMY 222
Query: 101 *YTL 90
+TL
Sbjct: 223 NHTL 226
>SB_11118| Best HMM Match : PSI (HMM E-Value=7.7)
Length = 138
Score = 31.9 bits (69), Expect = 0.53
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Frame = -1
Query: 461 HYAFTSNTQCSYTTDNIS--HKGHTYT*TYVCELNYESKIFISALQSLRLISNTECSYTT 288
H T+ TQCSY+ D +S H+ YT C + +F S+ + T+CS +
Sbjct: 26 HSVHTAGTQCSYSRDTVSVQHRHSVYTAETQCS-DSRDTVFRQQRHSV-YTAETQCSDSI 83
Query: 287 DNI 279
D +
Sbjct: 84 DTV 86
Score = 29.1 bits (62), Expect = 3.8
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = -1
Query: 371 ELNYESKIFISALQSLRLISNTECSYTTDNIS--HKGYTYTKHTYVS 237
E+N +FI S+ + T+CSY+ D +S H+ YT T S
Sbjct: 13 EMNSIDTVFIQQRHSVHT-AGTQCSYSRDTVSVQHRHSVYTAETQCS 58
>SB_28919| Best HMM Match : Ribosomal_S5 (HMM E-Value=0.79)
Length = 109
Score = 30.7 bits (66), Expect = 1.2
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = +2
Query: 155 SVV*LHCVFEISRNDCKALMKVLLS*FNSHTYVLCT--CNPYVKCCQWCNC 301
SVV + F +S++D A K+ S+ V + CNP CC+ C C
Sbjct: 32 SVVGDYFAFSLSKDDASACTKLAEKACGSYNSVPTSEPCNPLDACCKSCQC 82
>SB_4812| Best HMM Match : Sulfatase (HMM E-Value=0)
Length = 1040
Score = 29.9 bits (64), Expect = 2.2
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Frame = -3
Query: 336 FTIITTYLKYRMQLHH*QHFT*GLHVHKTY---VCELNYESKTFISALQSLRLISNTQCS 166
F ++ +Y K L +F G H Y V E+++ + AL+ L + +NT
Sbjct: 736 FLLVVSYAKVHTALFTTDYFK-GHSGHSPYGDNVEEMDWSVGQIMDALEELGVKNNTFVY 794
Query: 165 YTTDNIPH 142
+T+DN PH
Sbjct: 795 FTSDNGPH 802
Score = 28.7 bits (61), Expect = 5.0
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = -1
Query: 428 YTTDNIS-HKGHTYT*TYVCELNYESKIFISALQSLRLISNTECSYTTDNISH 273
+TTD H GH+ V E+++ + AL+ L + +NT +T+DN H
Sbjct: 750 FTTDYFKGHSGHSPYGDNVEEMDWSVGQIMDALEELGVKNNTFVYFTSDNGPH 802
>SB_25952| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 195
Score = 29.5 bits (63), Expect = 2.8
Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 2/83 (2%)
Frame = -1
Query: 455 AFTSNTQCSYTTDNISHKGHTYT*TYVCELNYESKIFISALQSLRLISNTEC--SYTTDN 282
++TS T ++TT +T T +Y C +Y S ++ S + C SYT+
Sbjct: 7 SYTSTTSYTHTTSYTHTTSYTSTPSYTCTTSYTSTPSYTSTTSYTPTPSYTCTTSYTSTT 66
Query: 281 ISHKGYTYTKHTYVS*TMKVKPS 213
+YT T + T P+
Sbjct: 67 SYTSTTSYTPTTSYTPTTSYTPT 89
>SB_27928| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 195
Score = 29.1 bits (62), Expect = 3.8
Identities = 20/67 (29%), Positives = 28/67 (41%)
Frame = -1
Query: 455 AFTSNTQCSYTTDNISHKGHTYT*TYVCELNYESKIFISALQSLRLISNTECSYTTDNIS 276
++TS T + TT S +T T +Y C +Y + S S T + TT S
Sbjct: 115 SYTSTTSYTSTTSYTSTTSYTSTTSYTCTTSYTCTTSYTCTTS--YTSTTSYTSTTSYTS 172
Query: 275 HKGYTYT 255
YT T
Sbjct: 173 TTSYTST 179
>SB_54795| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1220
Score = 28.7 bits (61), Expect = 5.0
Identities = 16/53 (30%), Positives = 24/53 (45%)
Frame = -1
Query: 407 HKGHTYT*TYVCELNYESKIFISALQSLRLISNTECSYTTDNISHKGYTYTKH 249
H HT+T Y C ++ S L + + ++ E S D ISH G +H
Sbjct: 945 HVVHTHTKPYTCNACNKTYRQTSTLANHKRTAHGEVSPDMDGISHDGSLINRH 997
>SB_242| Best HMM Match : AFP (HMM E-Value=0.45)
Length = 147
Score = 28.7 bits (61), Expect = 5.0
Identities = 20/67 (29%), Positives = 29/67 (43%)
Frame = -1
Query: 455 AFTSNTQCSYTTDNISHKGHTYT*TYVCELNYESKIFISALQSLRLISNTECSYTTDNIS 276
++TS T + TT S +T T +Y C +Y S ++ S S T + TT S
Sbjct: 25 SYTSTTSYTSTTSYTSTTSYTPTTSYTCTTSYTSTTSYTSTTS--YTSTTSYTSTTSYTS 82
Query: 275 HKGYTYT 255
Y T
Sbjct: 83 TTSYRST 89
>SB_38959| Best HMM Match : EGF (HMM E-Value=0.14)
Length = 177
Score = 28.3 bits (60), Expect = 6.6
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = -1
Query: 458 YAFTSNTQCSYTTDNISHKGHTYT*TYVCELNYESKIFISA 336
Y FT N Q +YT + +K T+ T C N + I + A
Sbjct: 85 YTFTPNGQLNYTMTSADNKTFTFVATDECNANDTTAITLMA 125
>SB_50705| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 258
Score = 28.3 bits (60), Expect = 6.6
Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Frame = -1
Query: 461 HYAFTSNTQCSYTTDNI-SHKGHTYT*TYVCELNYESKIFISALQSLRLISNTECSYTTD 285
H T+ TQCSY+ D + + H+ + +F S+ + T+CSY+ D
Sbjct: 185 HSVHTAETQCSYSRDTVFRQQRHSVQTAETQCSDSRDTVFRQQRHSVH-TAETQCSYSRD 243
Query: 284 NI 279
+
Sbjct: 244 TV 245
>SB_24004| Best HMM Match : EGF (HMM E-Value=5.7e-14)
Length = 808
Score = 28.3 bits (60), Expect = 6.6
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = -1
Query: 458 YAFTSNTQCSYTTDNISHKGHTYT*TYVCELNYESKIFISA 336
Y FT N Q +YT + +K T+ T C N + I + A
Sbjct: 589 YTFTPNGQLNYTMTSTDNKTFTFVATDECNANDTTAITLMA 629
>SB_4088| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 895
Score = 28.3 bits (60), Expect = 6.6
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = -1
Query: 458 YAFTSNTQCSYTTDNISHKGHTYT*TYVCELNYESKIFISA 336
Y FT N Q +YT + +K T+ T C N + I + A
Sbjct: 109 YTFTPNGQLNYTMTSTDNKTFTFVATDECNANDTTAITLMA 149
>SB_11801| Best HMM Match : DEAD (HMM E-Value=5e-05)
Length = 1442
Score = 27.9 bits (59), Expect = 8.7
Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = +2
Query: 353 YFHSSTHI-RMFMCTCDPYVKCCQWC 427
+F S+ H R+ T DPY+K C++C
Sbjct: 840 HFQSTKHKNRIAKVTADPYLKFCEYC 865
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,281,461
Number of Sequences: 59808
Number of extensions: 366395
Number of successful extensions: 883
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 851
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1901817086
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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