Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1702
         (688 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    24   1.0  
EF222288-1|ABN79648.1|   73|Tribolium castaneum adipokinetic hor...    23   3.1  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   5.4  
DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...    21   9.5  

>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = +3

Query: 243 TRHADPALLRPGRLDRKIEIPLPNEQARLEILKIHASP 356
           T H  P  +RP  L  K EIP P   + +   K+  SP
Sbjct: 60  THHKAP--IRPVALPPKREIPSPKRSSPILAEKVSVSP 95


>EF222288-1|ABN79648.1|   73|Tribolium castaneum adipokinetic
           hormone 1 protein.
          Length = 73

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -2

Query: 270 SAERGQRVWSVGGHDDLHLSQGVETIHLVQQLHQ 169
           S + G+R  S  G D  +  + VETI L+ ++ Q
Sbjct: 24  STDWGKRSGSSAGSDANNCKEPVETIMLIYKIIQ 57


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = -2

Query: 393  RPLRSPFRRAWRSATRGSSRFPI*PVHW 310
            +P   P   +W+  T+ S R P    HW
Sbjct: 1156 KPGHKPSTSSWQKPTKPSYRPPSTTNHW 1183


>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
           protein.
          Length = 311

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +3

Query: 648 IRFKLRLNKCYV 683
           IR  L LNKC+V
Sbjct: 131 IRHNLSLNKCFV 142


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,019
Number of Sequences: 336
Number of extensions: 3686
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18010165
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)