Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1702
(688 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo... 171 1e-43
SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz... 118 1e-27
SPCC576.10c |rpt3||19S proteasome regulatory subunit Rpt3|Schizo... 114 1e-26
SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S... 114 1e-26
SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi... 108 8e-25
SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ... 105 8e-24
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz... 76 4e-15
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po... 75 1e-14
SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p... 73 3e-14
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb... 72 7e-14
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 72 9e-14
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 72 9e-14
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 66 4e-12
SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po... 64 1e-11
SPAC1834.11c |sec18||secretory pathway protein Sec18 |Schizosacc... 64 2e-11
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||... 64 2e-11
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 61 1e-10
SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1 |Schiz... 49 6e-07
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos... 48 1e-06
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos... 42 6e-05
SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces po... 31 0.12
SPAC1556.08c ||SPAC1F12.01c|protein kinase activator Snf4 |Schiz... 29 0.63
SPAC13F5.02c |ptr6|taf7|transcription factor TFIID complex subun... 29 0.83
SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces po... 27 1.9
SPAC6G10.07 |||nuclear cap-binding complex large subunit |Schizo... 26 4.4
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 26 4.4
SPAC20G8.08c |fft1||fun thirty related protein Fft1|Schizosaccha... 26 5.9
>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 388
Score = 171 bits (415), Expect = 1e-43
Identities = 82/104 (78%), Positives = 88/104 (84%)
Frame = +1
Query: 1 SAIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMEL 180
SAIVDKYIGESAR+IREMF YA++H+PC+IFMDEIDAIGGRRFSEGTSADREIQRTLMEL
Sbjct: 200 SAIVDKYIGESARIIREMFGYAKEHEPCVIFMDEIDAIGGRRFSEGTSADREIQRTLMEL 259
Query: 181 LNQMDGFDSLGQVKIIMATNRPDTLTPLC*GPEDWTGKSKYPCP 312
LNQMDGFD LGQ KIIMATNRPDTL P P K + P P
Sbjct: 260 LNQMDGFDYLGQTKIIMATNRPDTLDPALLRPGRLDRKIEIPLP 303
Score = 133 bits (322), Expect = 2e-32
Identities = 62/88 (70%), Positives = 73/88 (82%)
Frame = +3
Query: 255 DPALLRPGRLDRKIEIPLPNEQARLEILKIHASPIAKHGEMDYEAVVKLSDTFNGADLRN 434
DPALLRPGRLDRKIEIPLPNE R+EILKIH ++K GE+DYEA+VKL+D NGADLRN
Sbjct: 285 DPALLRPGRLDRKIEIPLPNEVGRMEILKIHLEKVSKQGEIDYEALVKLTDGTNGADLRN 344
Query: 435 VCTEAGLFAIRAEREYIIQEDLMKASVK 518
V TEAG AI+ +R+Y+IQ DLM A+ K
Sbjct: 345 VVTEAGFIAIKEDRDYVIQSDLMSAARK 372
Score = 26.2 bits (55), Expect = 4.4
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +2
Query: 512 RKVADNKKLESKLDYK 559
RKVAD KKLE +DY+
Sbjct: 371 RKVADLKKLEGTIDYQ 386
>SPBC16C6.07c |rpt1||19S proteasome regulatory subunit
Rpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 118 bits (283), Expect = 1e-27
Identities = 49/85 (57%), Positives = 65/85 (76%)
Frame = +1
Query: 1 SAIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMEL 180
S +V KY+GE AR++RE+F AR + CIIF DEIDAIGG RF +G D E+QRT++EL
Sbjct: 247 SELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLEL 306
Query: 181 LNQMDGFDSLGQVKIIMATNRPDTL 255
+ Q+DGFD G +K++ ATNRP+TL
Sbjct: 307 ITQLDGFDPRGNIKVLFATNRPNTL 331
Score = 88.6 bits (210), Expect = 7e-19
Identities = 41/88 (46%), Positives = 60/88 (68%)
Frame = +3
Query: 255 DPALLRPGRLDRKIEIPLPNEQARLEILKIHASPIAKHGEMDYEAVVKLSDTFNGADLRN 434
D AL+RPGR+DRK+E LP+ + R IL+IHA +A ++ +E + +L + GA+LR+
Sbjct: 332 DEALMRPGRIDRKVEFGLPDLEGRAHILRIHAKSMAIDKDIRWELIARLCPSQTGAELRS 391
Query: 435 VCTEAGLFAIRAEREYIIQEDLMKASVK 518
VCTEAG+FAIRA R ++D + A K
Sbjct: 392 VCTEAGMFAIRARRRVATEKDFLDAVQK 419
>SPCC576.10c |rpt3||19S proteasome regulatory subunit
Rpt3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 389
Score = 114 bits (275), Expect = 1e-26
Identities = 56/107 (52%), Positives = 71/107 (66%)
Frame = +1
Query: 1 SAIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMEL 180
S V KY+GE R++R++F AR++ P IIF+DEIDAI +RF T ADRE+QR L+EL
Sbjct: 202 SEFVQKYLGEGPRMVRDVFRMARENAPAIIFIDEIDAIATKRFDAQTGADREVQRILIEL 261
Query: 181 LNQMDGFDSLGQVKIIMATNRPDTLTPLC*GPEDWTGKSKYPCPMNR 321
L QMDGFD VK+IMATNR DTL P P K ++P +R
Sbjct: 262 LTQMDGFDQGANVKVIMATNRADTLDPALLRPGRLDRKIEFPSYRDR 308
Score = 62.5 bits (145), Expect = 6e-11
Identities = 36/87 (41%), Positives = 49/87 (56%), Gaps = 2/87 (2%)
Frame = +3
Query: 255 DPALLRPGRLDRKIEIPLPNE--QARLEILKIHASPIAKHGEMDYEAVVKLSDTFNGADL 428
DPALLRPGRLDRKIE P + Q RL I A + E+D + + D +GA +
Sbjct: 287 DPALLRPGRLDRKIEFPSYRDRRQRRLVFQTITAKMLLSP-EVDLDTFIMRPDASSGAQI 345
Query: 429 RNVCTEAGLFAIRAEREYIIQEDLMKA 509
+ +AGL A+R R I+Q D+ +A
Sbjct: 346 AAIMQDAGLLAVRKSRGVILQSDIEEA 372
>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 403
Score = 114 bits (274), Expect = 1e-26
Identities = 56/105 (53%), Positives = 73/105 (69%), Gaps = 1/105 (0%)
Frame = +1
Query: 1 SAIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRF-SEGTSADREIQRTLME 177
S +V KYIGE +R++RE+F AR+H P IIFMDEID+IG R S G S D E+QRT++E
Sbjct: 213 SELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRSDSSGGSGDSEVQRTMLE 272
Query: 178 LLNQMDGFDSLGQVKIIMATNRPDTLTPLC*GPEDWTGKSKYPCP 312
LLNQ+DGF++ +K+IMATNR D L P P K ++P P
Sbjct: 273 LLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPP 317
Score = 90.6 bits (215), Expect = 2e-19
Identities = 42/88 (47%), Positives = 61/88 (69%)
Frame = +3
Query: 255 DPALLRPGRLDRKIEIPLPNEQARLEILKIHASPIAKHGEMDYEAVVKLSDTFNGADLRN 434
DPALLRPGR+DRKIE P P+ +AR EIL+IH+ + +D +++ + + +GA+L+
Sbjct: 299 DPALLRPGRIDRKIEFPPPSAEARAEILRIHSRSMNLTRGIDLKSIAEKMNGASGAELKG 358
Query: 435 VCTEAGLFAIRAEREYIIQEDLMKASVK 518
VCTEAG+FA+R R ++ QED A K
Sbjct: 359 VCTEAGMFALRERRVHVTQEDFELAVAK 386
>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 448
Score = 108 bits (259), Expect = 8e-25
Identities = 48/88 (54%), Positives = 67/88 (76%), Gaps = 1/88 (1%)
Frame = +1
Query: 1 SAIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMEL 180
S ++ KY+G+ RL+R++FN A +H P I+F+DEIDAIG +R+ + A+REIQRT++EL
Sbjct: 259 SELIQKYLGDGPRLVRQLFNAAEEHSPSIVFIDEIDAIGTKRYDAQSGAEREIQRTMLEL 318
Query: 181 LNQMDGFD-SLGQVKIIMATNRPDTLTP 261
LNQ+DGFD S +K+IMATNR L P
Sbjct: 319 LNQLDGFDTSQRDIKVIMATNRISDLDP 346
Score = 72.9 bits (171), Expect = 4e-14
Identities = 34/93 (36%), Positives = 57/93 (61%)
Frame = +3
Query: 255 DPALLRPGRLDRKIEIPLPNEQARLEILKIHASPIAKHGEMDYEAVVKLSDTFNGADLRN 434
DPAL+RPGR+DRKI P+E + +I IH S + +++ E +++ D +GA+++
Sbjct: 345 DPALIRPGRIDRKILFENPDEATKRKIFTIHTSKMNLGEDVNLEELIQCKDDLSGAEIKA 404
Query: 435 VCTEAGLFAIRAEREYIIQEDLMKASVK*PTTK 533
+ +EAGL A+R R ++ +D +A K TK
Sbjct: 405 IVSEAGLLALRERRMRVVMDDFRQAREKVLKTK 437
>SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit
Rpt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 438
Score = 105 bits (251), Expect = 8e-24
Identities = 49/102 (48%), Positives = 69/102 (67%)
Frame = +1
Query: 7 IVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLN 186
+V +IG+ A+L+R+ F A++ P IIF+DE+DAIG +RF + DRE+QRT++ELLN
Sbjct: 255 LVQMFIGDGAKLVRDAFALAKEKSPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLN 314
Query: 187 QMDGFDSLGQVKIIMATNRPDTLTPLC*GPEDWTGKSKYPCP 312
Q+DGF S +VK+I ATNR DTL P K ++P P
Sbjct: 315 QLDGFSSDDRVKVIAATNRVDTLDPALLRSGRLDRKLEFPLP 356
Score = 89.0 bits (211), Expect = 6e-19
Identities = 43/94 (45%), Positives = 63/94 (67%)
Frame = +3
Query: 255 DPALLRPGRLDRKIEIPLPNEQARLEILKIHASPIAKHGEMDYEAVVKLSDTFNGADLRN 434
DPALLR GRLDRK+E PLPNE+AR+ IL+IH+ +A ++++E + + +D +NGA L++
Sbjct: 338 DPALLRSGRLDRKLEFPLPNEEARVGILRIHSRKMAIDDDINWEELARSTDEYNGAMLKS 397
Query: 435 VCTEAGLFAIRAEREYIIQEDLMKASVK*PTTKS 536
VC EAG+ A+R I E M ++ KS
Sbjct: 398 VCVEAGMIALRQGDTKINHEHFMDGILEVQMRKS 431
>SPBC56F2.07c |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 76.2 bits (179), Expect = 4e-15
Identities = 37/85 (43%), Positives = 54/85 (63%)
Frame = +1
Query: 7 IVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLN 186
+ DK++GES R +R++F AR P +IF DEIDA+ R E S+D R + LLN
Sbjct: 618 LFDKFVGESERAVRQVFQKARQASPSVIFFDEIDALTANR-GEDNSSD----RVVAALLN 672
Query: 187 QMDGFDSLGQVKIIMATNRPDTLTP 261
++DG ++L V ++ ATNRPD + P
Sbjct: 673 ELDGIEALRNVLVLAATNRPDMIDP 697
Score = 73.3 bits (172), Expect = 3e-14
Identities = 36/84 (42%), Positives = 56/84 (66%)
Frame = +1
Query: 4 AIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELL 183
++V KY+GE+ +R++F AR HQP IIF+DEIDA+ +R + + A+ TL+ LL
Sbjct: 348 SVVGKYLGETESRLRKIFEDARAHQPSIIFIDEIDALAPKRTEDVSEAESRAVATLLTLL 407
Query: 184 NQMDGFDSLGQVKIIMATNRPDTL 255
DG + G+V +I ATNRP+++
Sbjct: 408 ---DGMANAGKVVVIAATNRPNSI 428
Score = 62.1 bits (144), Expect = 7e-11
Identities = 29/75 (38%), Positives = 49/75 (65%)
Frame = +3
Query: 255 DPALLRPGRLDRKIEIPLPNEQARLEILKIHASPIAKHGEMDYEAVVKLSDTFNGADLRN 434
DPAL+RPGRLDR + + PN +AR +I+KI A + ++D + + + ++ +GA++
Sbjct: 696 DPALMRPGRLDRLLYVGPPNFEARKQIVKIQAEKMKFAEDVDLDLIAEKTEGCSGAEVVA 755
Query: 435 VCTEAGLFAIRAERE 479
+C EAGL A+ + E
Sbjct: 756 LCQEAGLIAMHEDLE 770
Score = 54.4 bits (125), Expect = 1e-08
Identities = 32/82 (39%), Positives = 49/82 (59%), Gaps = 1/82 (1%)
Frame = +3
Query: 255 DPALLRPGRLDRKIEIPLPNEQARLEILKIHASPIAKH-GEMDYEAVVKLSDTFNGADLR 431
D AL RPGRL+++IEI +P++ ARL+I+K+ S + + E + + + GADL
Sbjct: 429 DEALRRPGRLEKEIEIGIPDKSARLDIIKLLLSGVPNEINDAQLEDLASRTHAYVGADLA 488
Query: 432 NVCTEAGLFAIRAEREYIIQED 497
V EA L AI+ R +Q+D
Sbjct: 489 AVVREAALRAIK--RTISLQKD 508
>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 937
Score = 74.5 bits (175), Expect = 1e-14
Identities = 34/85 (40%), Positives = 55/85 (64%)
Frame = +1
Query: 7 IVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLN 186
++DKYIG+S + +R++F+ A+ +PC++F DE D++ RR + T R + ++L
Sbjct: 676 LLDKYIGKSEQGVRDLFSRAQMAKPCVLFFDEFDSVAPRRGQDSTGV---TDRVVNQILT 732
Query: 187 QMDGFDSLGQVKIIMATNRPDTLTP 261
QMDG +SL V I+ AT RPD + P
Sbjct: 733 QMDGAESLDGVYIVAATTRPDMIDP 757
Score = 53.2 bits (122), Expect = 3e-08
Identities = 29/70 (41%), Positives = 42/70 (60%)
Frame = +3
Query: 255 DPALLRPGRLDRKIEIPLPNEQARLEILKIHASPIAKHGEMDYEAVVKLSDTFNGADLRN 434
DPALLRPGRLD+ I LPNE+ RLE+L+ A+ + + L+D + ADL +
Sbjct: 756 DPALLRPGRLDKLIFCDLPNEEERLEVLQKLANRFHIENAAMLKKLSTLTDGYTYADLSS 815
Query: 435 VCTEAGLFAI 464
+ +A L A+
Sbjct: 816 LLYDAHLIAV 825
>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 773
Score = 73.3 bits (172), Expect = 3e-14
Identities = 37/88 (42%), Positives = 53/88 (60%), Gaps = 1/88 (1%)
Frame = +1
Query: 1 SAIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGT-SADREIQRTLME 177
S ++ ++G +R++F AR + PCIIF+DEIDAIG R G ++ E + TL +
Sbjct: 363 SEFLEMFVGVGPSRVRDLFATARKNAPCIIFIDEIDAIGKARGRGGQFGSNDERESTLNQ 422
Query: 178 LLNQMDGFDSLGQVKIIMATNRPDTLTP 261
LL +MDGF S + + TNRPD L P
Sbjct: 423 LLVEMDGFTSSEHIVVFAGTNRPDVLDP 450
Score = 61.7 bits (143), Expect = 1e-10
Identities = 33/74 (44%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Frame = +3
Query: 255 DPALLRPGRLDRKIEIPLPNEQARLEILKIHASPIAKHGEMDYEA--VVKLSDTFNGADL 428
DPALLRPGR DR+I I P+ R +I K+H I +D A + L+ F GAD+
Sbjct: 449 DPALLRPGRFDRQITIDRPDIGGREQIFKVHLKHIKAADNIDLIAKRLAVLTSGFTGADI 508
Query: 429 RNVCTEAGLFAIRA 470
NVC E L A R+
Sbjct: 509 MNVCNEGALIAARS 522
>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 779
Score = 72.1 bits (169), Expect = 7e-14
Identities = 35/85 (41%), Positives = 51/85 (60%)
Frame = +1
Query: 7 IVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLN 186
+++KY+GES R +R++F AR PC+IF DE+DA+ RR + A + T LL
Sbjct: 562 LLNKYVGESERAVRQVFLRARASSPCVIFFDELDAMVPRRDDSLSEASSRVVNT---LLT 618
Query: 187 QMDGFDSLGQVKIIMATNRPDTLTP 261
++DG V +I ATNRPD + P
Sbjct: 619 ELDGLSDRSGVYVIAATNRPDIIDP 643
Score = 58.4 bits (135), Expect = 9e-10
Identities = 31/85 (36%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Frame = +1
Query: 4 AIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELL 183
+IV GES + +RE+F A+ PC++F+DEIDA+ +R S +R I + +
Sbjct: 243 SIVSGMSGESEKKVREVFEEAKSLAPCLMFIDEIDAVTPKRESAQREMERRIVAQFLTCM 302
Query: 184 NQMDGFDSLGQ-VKIIMATNRPDTL 255
+++ + G+ V +I ATNRPD+L
Sbjct: 303 DELSFEKTDGKPVLVIGATNRPDSL 327
Score = 54.0 bits (124), Expect = 2e-08
Identities = 28/74 (37%), Positives = 44/74 (59%), Gaps = 2/74 (2%)
Frame = +3
Query: 255 DPALLRPGRLDRKIEIPLPNEQARLEILKIHASPIAKHGEMDYEAVVK--LSDTFNGADL 428
DPA+LRPGRLD+ + + LP+ R+EILK H E++ + + + F+GADL
Sbjct: 642 DPAMLRPGRLDKTLLVDLPDAHERVEILKTLTKQTPLHEEVNLDVLGRDERCSNFSGADL 701
Query: 429 RNVCTEAGLFAIRA 470
+ EA + A+R+
Sbjct: 702 AALVREAAVTALRS 715
Score = 53.6 bits (123), Expect = 3e-08
Identities = 26/71 (36%), Positives = 43/71 (60%)
Frame = +3
Query: 255 DPALLRPGRLDRKIEIPLPNEQARLEILKIHASPIAKHGEMDYEAVVKLSDTFNGADLRN 434
D AL R GR DR+I + +P++ AR +IL+ A + G+ D+ + K + + GADL+
Sbjct: 328 DSALRRAGRFDREICLTVPSQDAREKILRTMAKGLKLSGDFDFRQLAKQTPGYVGADLKA 387
Query: 435 VCTEAGLFAIR 467
+ AG+ AI+
Sbjct: 388 LTAAAGIIAIK 398
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 71.7 bits (168), Expect = 9e-14
Identities = 41/101 (40%), Positives = 56/101 (55%)
Frame = +1
Query: 10 VDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQ 189
+ K++GE+ R +R +F A+ QP IIF DEID + R S+ I TL+ L
Sbjct: 342 LSKWVGEAERQLRLLFEEAKSTQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLAL--- 398
Query: 190 MDGFDSLGQVKIIMATNRPDTLTPLC*GPEDWTGKSKYPCP 312
MDG +S GQV II ATNRPD + P P + + +P P
Sbjct: 399 MDGMESRGQVIIIGATNRPDAVDPALRRPGRFDREFYFPLP 439
Score = 56.4 bits (130), Expect = 4e-09
Identities = 31/72 (43%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Frame = +3
Query: 255 DPALLRPGRLDRKIEIPLPNEQARLEILKIHA-SPIAKHGEMDYEAVVKLSDTFNGADLR 431
DPAL RPGR DR+ PLP+ AR +I++IH + E + + S + GADLR
Sbjct: 421 DPALRRPGRFDREFYFPLPDRDARKKIIEIHTRNWDPPVPEWLCSMLAEKSKGYGGADLR 480
Query: 432 NVCTEAGLFAIR 467
+CTEA L +I+
Sbjct: 481 ALCTEAALNSIK 492
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 71.7 bits (168), Expect = 9e-14
Identities = 42/104 (40%), Positives = 57/104 (54%)
Frame = +1
Query: 1 SAIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMEL 180
S + K++GE+ R +R +F AR QP IIF DEID + R S+ I TL+ L
Sbjct: 445 SDCLSKWVGEAERQLRLLFEEARRVQPSIIFFDEIDGLAPIRSSKQEQTHSSIVSTLLAL 504
Query: 181 LNQMDGFDSLGQVKIIMATNRPDTLTPLC*GPEDWTGKSKYPCP 312
MDG D+ GQV +I ATNRP+ L P P + + +P P
Sbjct: 505 ---MDGLDTRGQVVVIGATNRPNDLDPALRRPGRFDREFYFPLP 545
Score = 64.5 bits (150), Expect = 1e-11
Identities = 36/74 (48%), Positives = 48/74 (64%), Gaps = 3/74 (4%)
Frame = +3
Query: 255 DPALLRPGRLDRKIEIPLPNEQARLEILKI---HASPIAKHGEMDYEAVVKLSDTFNGAD 425
DPAL RPGR DR+ PLPN+QAR++IL+I H SP K E + + + + GAD
Sbjct: 527 DPALRRPGRFDREFYFPLPNKQARMKILEINSLHFSP--KIPESYLLHLAESTSGYGGAD 584
Query: 426 LRNVCTEAGLFAIR 467
L+ +CTEA L A+R
Sbjct: 585 LKALCTEAALNAVR 598
Score = 26.6 bits (56), Expect = 3.4
Identities = 20/83 (24%), Positives = 31/83 (37%)
Frame = +3
Query: 219 EDHHGHQQTRHADPALLRPGRLDRKIEIPLPNEQARLEILKIHASPIAKHGEMDYEAVVK 398
EDH H + H DP+ + + + + + L+ H + + E K
Sbjct: 34 EDHSNHIKVSHFDPSSYK----QKLVSVRETQRNRKFSSLQKHLNTETPSFSVSIENPSK 89
Query: 399 LSDTFNGADLRNVCTEAGLFAIR 467
S FN A L TE + IR
Sbjct: 90 PSAAFNDASLGKKSTEHQIDGIR 112
>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 66.1 bits (154), Expect = 4e-12
Identities = 34/86 (39%), Positives = 53/86 (61%), Gaps = 1/86 (1%)
Frame = +1
Query: 7 IVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIG-GRRFSEGTSADREIQRTLMELL 183
++ + GES +R++F+ AR PC++F+DE+D+I R S G S + R + +LL
Sbjct: 567 LLSMWFGESESNVRDIFDKARAAAPCVVFLDELDSIAKARGASAGDSGGGD--RVVNQLL 624
Query: 184 NQMDGFDSLGQVKIIMATNRPDTLTP 261
+MDG +S V +I ATNRPD + P
Sbjct: 625 TEMDGVNSKKNVFVIGATNRPDQIDP 650
Score = 64.5 bits (150), Expect = 1e-11
Identities = 32/88 (36%), Positives = 54/88 (61%), Gaps = 1/88 (1%)
Frame = +3
Query: 255 DPALLRPGRLDRKIEIPLPNEQARLEILKIHASPIAKHGEMDYEAVVKLSDTFNGADLRN 434
DPAL R GR DR++++ +P+ RLEIL+IH + ++D E + + + G+DL +
Sbjct: 374 DPALRRFGRFDREVDVGIPDPTGRLEILRIHTKNMKLADDVDLEQIAAETHGYVGSDLAS 433
Query: 435 VCTEAGLFAIRAEREYI-IQEDLMKASV 515
+C+EA + IR + + I + ED + A V
Sbjct: 434 LCSEAAMQQIREKMDMIDLDEDEIDAEV 461
Score = 64.1 bits (149), Expect = 2e-11
Identities = 36/83 (43%), Positives = 53/83 (63%), Gaps = 2/83 (2%)
Frame = +3
Query: 255 DPALLRPGRLDRKIEIPLPNEQARLEIL--KIHASPIAKHGEMDYEAVVKLSDTFNGADL 428
DPAL+RPGRLD+ I +PLP+E+AR IL ++ +P+A+ ++D AV K + F+GADL
Sbjct: 649 DPALMRPGRLDQLIYVPLPDEEARFSILQTQLRHTPVAE--DVDLRAVAKATHGFSGADL 706
Query: 429 RNVCTEAGLFAIRAEREYIIQED 497
V A AI+ E I+ +
Sbjct: 707 EFVVQRAVKLAIKDSIEEDIKRE 729
Score = 62.9 bits (146), Expect = 4e-11
Identities = 34/85 (40%), Positives = 52/85 (61%)
Frame = +1
Query: 7 IVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLN 186
I+ K GES +R+ F A + P IIF+DEID+I +R E T+ + E +R + +LL
Sbjct: 294 IMSKMAGESESNLRKAFEEAEKNSPAIIFIDEIDSIAPKR--EKTNGEVE-RRVVSQLLT 350
Query: 187 QMDGFDSLGQVKIIMATNRPDTLTP 261
MDG + V ++ ATNRP+++ P
Sbjct: 351 LMDGMKARSNVVVMAATNRPNSIDP 375
>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 432
Score = 64.5 bits (150), Expect = 1e-11
Identities = 41/87 (47%), Positives = 56/87 (64%), Gaps = 2/87 (2%)
Frame = +1
Query: 1 SAIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMEL 180
S +V K++GES RL+R++F AR+ +P IIF+DEID++ G R SEG S +R E
Sbjct: 196 SDLVSKWMGESERLVRQLFEMAREQKPSIIFIDEIDSLCGSR-SEGES--ESSRRIKTEF 252
Query: 181 LNQMDGF--DSLGQVKIIMATNRPDTL 255
L QM+G D G V ++ ATN P TL
Sbjct: 253 LVQMNGVGKDESG-VLVLGATNIPWTL 278
Score = 40.3 bits (90), Expect = 3e-04
Identities = 21/72 (29%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Frame = +3
Query: 255 DPALLRPGRLDRKIEIPLPNEQARLEILKIHASPI-AKHGEMDYEAVVKLSDTFNGADLR 431
D A+ R R +++I IPLPN AR + +++ I ++ D++ + K++D ++G+D+
Sbjct: 279 DSAIRR--RFEKRIYIPLPNAHARARMFELNVGKIPSELTSQDFKELAKMTDGYSGSDIS 336
Query: 432 NVCTEAGLFAIR 467
V +A + +R
Sbjct: 337 IVVRDAIMEPVR 348
>SPAC1834.11c |sec18||secretory pathway protein Sec18
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 792
Score = 64.1 bits (149), Expect = 2e-11
Identities = 33/73 (45%), Positives = 47/73 (64%), Gaps = 4/73 (5%)
Frame = +3
Query: 255 DPALLRPGRLDRKIEIPLPNEQARLEILKIHASPIAKHG----EMDYEAVVKLSDTFNGA 422
D ALLRPGRL+ +EI LP+E RL+ILKIH S +A +G ++D E + L+ F+GA
Sbjct: 431 DEALLRPGRLEVHMEISLPDEHGRLQILKIHTSRMASNGILENDVDMEELASLTKNFSGA 490
Query: 423 DLRNVCTEAGLFA 461
++ + A FA
Sbjct: 491 EIAGLIKSASSFA 503
Score = 46.0 bits (104), Expect = 5e-06
Identities = 32/91 (35%), Positives = 50/91 (54%), Gaps = 8/91 (8%)
Frame = +1
Query: 7 IVDKYIGESARLIREMFNYA-RDHQPC-------IIFMDEIDAIGGRRFSEGTSADREIQ 162
I++KY+G+S +R++F A R+++ II DE+DAI +R S G Q
Sbjct: 341 ILNKYVGQSEENVRKLFADAEREYRDRGEESGLHIIIFDELDAICKKRGSSGGDTGVGDQ 400
Query: 163 RTLMELLNQMDGFDSLGQVKIIMATNRPDTL 255
+ +LL +MDG D L + +I TNR D +
Sbjct: 401 -VVNQLLAKMDGVDQLNNILVIGMTNRKDMI 430
>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 948
Score = 64.1 bits (149), Expect = 2e-11
Identities = 33/87 (37%), Positives = 52/87 (59%), Gaps = 2/87 (2%)
Frame = +1
Query: 7 IVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLN 186
+++ Y+GES +R +F AR+ PC+IF DE+D+I R + S + + R + +LL
Sbjct: 724 LLNMYVGESEANVRNVFEKARNSSPCVIFFDELDSIAPHRGNSSDSGN-VMDRVVSQLLA 782
Query: 187 QMDGF--DSLGQVKIIMATNRPDTLTP 261
++D D+ V +I ATNRPD L P
Sbjct: 783 ELDSISKDNNKYVFVIGATNRPDLLDP 809
Score = 41.5 bits (93), Expect = 1e-04
Identities = 23/79 (29%), Positives = 42/79 (53%), Gaps = 2/79 (2%)
Frame = +3
Query: 255 DPALLRPGRLDRKIEIPL-PNEQARLEILKIHASPIAKHGEMDYEAVVK-LSDTFNGADL 428
DP+LLRPGR D+ + + + +E+++ +L+ +D + K F GAD+
Sbjct: 808 DPSLLRPGRFDKLVYLGINKSEESKASMLRALTKTFKLDETIDLNEIAKNCHPNFTGADM 867
Query: 429 RNVCTEAGLFAIRAEREYI 485
+C++A L AI+ + I
Sbjct: 868 YALCSDAVLSAIKRKTNEI 886
>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 709
Score = 61.3 bits (142), Expect = 1e-10
Identities = 30/82 (36%), Positives = 45/82 (54%)
Frame = +3
Query: 255 DPALLRPGRLDRKIEIPLPNEQARLEILKIHASPIAKHGEMDYEAVVKLSDTFNGADLRN 434
DPAL RPGR DR I +PLP+ + RL IL H + ++D + + + F GADL N
Sbjct: 420 DPALTRPGRFDRHIHVPLPDVRGRLAILLQHTRHVPLGKDVDLSIIARGTSGFAGADLAN 479
Query: 435 VCTEAGLFAIRAEREYIIQEDL 500
+ +A ++A + + DL
Sbjct: 480 LINQAAVYASKNLSTAVSMRDL 501
Score = 60.9 bits (141), Expect = 2e-10
Identities = 38/104 (36%), Positives = 56/104 (53%), Gaps = 4/104 (3%)
Frame = +1
Query: 13 DKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQM 192
+ Y+G A+ +RE+F AR P IIF+DE+DAIG +R + + +++TL +LL +
Sbjct: 338 EMYVGVGAKRVRELFAAARKQAPSIIFIDELDAIGQKRNARDAA---HMRQTLNQLLVDL 394
Query: 193 DGF----DSLGQVKIIMATNRPDTLTPLC*GPEDWTGKSKYPCP 312
DGF D V I ATN P++L P P + P P
Sbjct: 395 DGFSKNEDLAHPVVFIGATNFPESLDPALTRPGRFDRHIHVPLP 438
>SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 355
Score = 49.2 bits (112), Expect = 6e-07
Identities = 31/82 (37%), Positives = 47/82 (57%), Gaps = 2/82 (2%)
Frame = +1
Query: 7 IVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLN 186
+ DK+ GES +L+ +F AR +P IIF+DEID +R A +I+ E ++
Sbjct: 161 LTDKWFGESNKLVDALFTLARKLEPTIIFIDEIDTFLRQRQRTDHEAMAQIK---AEFMS 217
Query: 187 QMDGFDSLGQVKIIM--ATNRP 246
DG S GQ ++++ ATNRP
Sbjct: 218 MWDGLLS-GQSRVLVLGATNRP 238
Score = 39.1 bits (87), Expect = 6e-04
Identities = 19/65 (29%), Positives = 34/65 (52%)
Frame = +3
Query: 255 DPALLRPGRLDRKIEIPLPNEQARLEILKIHASPIAKHGEMDYEAVVKLSDTFNGADLRN 434
D A+ R R+ + IPLPN + R +IL+++ + D+ VV + +G+ ++
Sbjct: 242 DEAIRR--RMPKVFSIPLPNAEQRRKILELYLKKVPLEANFDWNGVVNATAGLSGSYIKE 299
Query: 435 VCTEA 449
VC A
Sbjct: 300 VCRSA 304
>SPAC328.04 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 48.0 bits (109), Expect = 1e-06
Identities = 24/63 (38%), Positives = 38/63 (60%)
Frame = +1
Query: 1 SAIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMEL 180
S++ K++GES +L+R +F A+ P IIF+DEID++ R S+G + +R E
Sbjct: 526 SSLTSKFLGESEKLVRALFTLAKKLSPSIIFVDEIDSLLSARSSDGNEHETS-RRIKTEF 584
Query: 181 LNQ 189
L Q
Sbjct: 585 LIQ 587
Score = 34.3 bits (75), Expect = 0.017
Identities = 21/75 (28%), Positives = 42/75 (56%), Gaps = 5/75 (6%)
Frame = +3
Query: 279 RLDRKIEIPLPNEQARLEILKIHASPIAKHGEM-----DYEAVVKLSDTFNGADLRNVCT 443
R R+ IPLP+E R ++H + + K+ + D EA+VK ++ ++G+DL +
Sbjct: 625 RFVRRTYIPLPDETTR----RLHLNNLLKYQKHSLSLEDIEAIVKATEYYSGSDLTALAK 680
Query: 444 EAGLFAIRAEREYII 488
+A + +R+ E ++
Sbjct: 681 DAAMGPLRSLGESLL 695
>SPBC947.01 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 42.3 bits (95), Expect = 6e-05
Identities = 22/63 (34%), Positives = 35/63 (55%)
Frame = +1
Query: 1 SAIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMEL 180
S++ KY+G+S +L+R +F A+ +IF+DEID+I R G + +R E
Sbjct: 446 SSLTSKYLGDSEKLVRALFEVAKRQTCSVIFVDEIDSILSARNDSGNEHESS-RRLKTEF 504
Query: 181 LNQ 189
L Q
Sbjct: 505 LIQ 507
>SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 449
Score = 31.5 bits (68), Expect = 0.12
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Frame = +1
Query: 85 IIFMDEID-AIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKIIMATNRPDTLTP 261
++ ++++D A GR S + T LLN +DG S + I M TN P+ L P
Sbjct: 297 VVLLEDVDSAFQGRERSGEVGFHANV--TFSGLLNALDGVTSSDERIIFMTTNHPEKLDP 354
Score = 25.8 bits (54), Expect = 5.9
Identities = 10/13 (76%), Positives = 12/13 (92%)
Frame = +3
Query: 255 DPALLRPGRLDRK 293
DPAL+RPGR+D K
Sbjct: 353 DPALVRPGRVDVK 365
>SPAC1556.08c ||SPAC1F12.01c|protein kinase activator Snf4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 334
Score = 29.1 bits (62), Expect = 0.63
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = -2
Query: 222 LHLSQGVETIHLVQQLHQGTLDLSIGARAFGKTSPTDGI 106
L++ + V+ +HL+Q LDLS+G + + DG+
Sbjct: 229 LNVYESVDVMHLIQDGDYSNLDLSVGEALLKRPANFDGV 267
>SPAC13F5.02c |ptr6|taf7|transcription factor TFIID complex subunit
Taf7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 393
Score = 28.7 bits (61), Expect = 0.83
Identities = 19/68 (27%), Positives = 31/68 (45%)
Frame = +1
Query: 49 EMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKII 228
E+ + A+ + I + E + G GTS DR+ Q ++ + MD D GQ++
Sbjct: 227 ELIDQAQLARDSSIALSEDTSFDGMAGLRGTSIDRDDQSVQTDMFDGMDEDDLAGQIEQG 286
Query: 229 MATNRPDT 252
M DT
Sbjct: 287 MLELSQDT 294
>SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 549
Score = 27.5 bits (58), Expect = 1.9
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +2
Query: 209 WDR*RSSWPPTDQTR*PRSAEARKIGQENRNTPAQ 313
W SW TD T+ ++ A I +N N P+Q
Sbjct: 272 WGETNGSWSSTDDTKHYKNEWAESINLDNFNRPSQ 306
>SPAC6G10.07 |||nuclear cap-binding complex large subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 780
Score = 26.2 bits (55), Expect = 4.4
Identities = 9/25 (36%), Positives = 17/25 (68%)
Frame = -3
Query: 239 LVAMMIFTCPKESKPSIWFNNSIRV 165
L +++ KE+KPS+W +N +R+
Sbjct: 155 LFSLLADAISKETKPSVWGDNFLRI 179
>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1828
Score = 26.2 bits (55), Expect = 4.4
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = -2
Query: 231 HDDLHLSQGVETIHLVQQLHQGTLDLSIGARAFGKTSPTDGI 106
HD L L + + +H +Q LDL +G + GK+S D I
Sbjct: 593 HDSLQLQEKCDVLHTT--FNQ--LDLYVGTTSVGKSSVLDNI 630
>SPAC20G8.08c |fft1||fun thirty related protein
Fft1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 944
Score = 25.8 bits (54), Expect = 5.9
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +1
Query: 109 AIGGRRFSEGTSADREIQRTLMELLNQMDGFDSL 210
A G R+ S+G + R++ + E+L D DSL
Sbjct: 325 ATGKRKKSDGRNVGRKLVNSTYEVLQGFDAVDSL 358
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,853,564
Number of Sequences: 5004
Number of extensions: 59121
Number of successful extensions: 212
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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