Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1701
         (705 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory recept...    26   0.26 
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    21   9.8  
AM292379-1|CAL23191.2|  376|Tribolium castaneum gustatory recept...    21   9.8  
AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory recept...    21   9.8  

>AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory receptor
           candidate 43 protein.
          Length = 353

 Score = 26.2 bits (55), Expect = 0.26
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = -2

Query: 194 NYYFIIIRH**KHYFNFKQTYKHLFLPLKNKKRCKYIKNSNAFCYCFKELYSL 36
           NYY I++       F  ++T+  L   LKN + C  IK +  +CY +   + +
Sbjct: 79  NYYVIVVTT-----FYKRRTWTRL---LKNLESCAKIKKTKRYCYYYYAFFGV 123


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 11/36 (30%), Positives = 14/36 (38%)
 Frame = +1

Query: 205 ISLAVACCDRLPAFDRFELRQCFFLRIVCRSYTSLF 312
           + L V    RLP FD+        L   C S   +F
Sbjct: 366 VQLIVEFAKRLPGFDKLLREDQIALLKACSSEVMMF 401


>AM292379-1|CAL23191.2|  376|Tribolium castaneum gustatory receptor
           candidate 58 protein.
          Length = 376

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -2

Query: 695 ISDQFFFKINVQNCKSLV 642
           I++Q   +IN +NC S V
Sbjct: 198 INEQMAVRINPKNCASFV 215


>AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory receptor
           candidate 48 protein.
          Length = 408

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +1

Query: 22  EQNAGNEYNSLKQ*QNAFEFFIYLHLFLFL 111
           +++  N+Y SL Q    F +FIYL    ++
Sbjct: 130 KESERNDYVSLLQLVFVFCYFIYLFTVYYI 159


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,683
Number of Sequences: 336
Number of extensions: 2969
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18634795
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)