Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1701
         (705 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8C9.16c |mug63||TLDc domain protein 1|Schizosaccharomyces po...    30   0.28 
SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces pom...    29   0.65 
SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter ...    28   1.5  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    27   3.5  
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    26   4.6  
SPAC6F6.08c |cdc16|bub2|two-component GAP Cdc16|Schizosaccharomy...    26   6.0  

>SPAC8C9.16c |mug63||TLDc domain protein 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 188

 Score = 30.3 bits (65), Expect = 0.28
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -2

Query: 158 HYFNFKQTYKHLFLPLKNKKRCKYIKNSNAFCYCFK 51
           HYF  ++T+   + P K      ++ NSN   YC K
Sbjct: 96  HYFGSEETFLWKYFPPKKYVHYPFVGNSNFVAYCTK 131


>SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 687

 Score = 29.1 bits (62), Expect = 0.65
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +1

Query: 397 GCDICVRKTTTTYLLNTELANGQLFEPFEYSYYLFNQFFFINYHK 531
           G  + V K T TY+   +LA   LF  FE+ Y  + +++    HK
Sbjct: 561 GSSMKVAKITLTYIYAIKLA--LLFNDFEFGYAAWQEYWHCKIHK 603


>SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter
           Str2 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 597

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +2

Query: 434 TY*TRNSQTGNFSNRSNIVTIYLISFFLLITIK 532
           TY  +   T NFS  SN+ TI L+   LL  ++
Sbjct: 86  TYSLQRYATSNFSAHSNLATINLVGNILLAVVR 118


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
           Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = +3

Query: 324 YKTKSLISPVFFFSLSSCHM*RALGL*YLCTKNYHYIPTEHGTRKRAT 467
           YK K LIS ++   + S +    L + ++    YH +P E G R   T
Sbjct: 809 YKPKILISQIWNAIVISMYREHLLSIDHVQRLLYHQVPAEEGRRTLRT 856


>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1096

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 24/100 (24%), Positives = 45/100 (45%), Gaps = 7/100 (7%)
 Frame = +1

Query: 406 ICVRKTTTTYLLNTELANGQLFEPFEYSYYLFNQFFFINYHKSILNNFSLMHVLRD---- 573
           +  +K+  T LLN  L    LF+      +L + F F +     ++++S+   +++    
Sbjct: 185 VSTKKSIVTILLNEVLHPFYLFQAVSVLIWLCDSFVFYSCCIVFISSYSIFLSVKESKES 244

Query: 574 E*MVFSVVGSK---L*GKNIKKNTVLTSDLQFCTLILKKN 684
           E  + S++G+       +N  K TVL  DL    L+   N
Sbjct: 245 ENRIHSIIGAPQPVTVIRNQVKQTVLADDLVIGDLLYFSN 284


>SPAC6F6.08c |cdc16|bub2|two-component GAP Cdc16|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 299

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -3

Query: 220 PLLAKYVVKITILLLFDINKNITLILNKH 134
           PL AK ++KITILL+  +   +  +L +H
Sbjct: 257 PLNAKNIMKITILLISKLPPELYNLLARH 285


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,605,318
Number of Sequences: 5004
Number of extensions: 50417
Number of successful extensions: 122
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)