Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1701
         (705 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0481 + 23284296-23284448,23284553-23284753,23284855-232879...    29   4.8  

>02_04_0481 + 23284296-23284448,23284553-23284753,23284855-23287971,
            23288510-23289353,23289468-23290120,23290573-23290676,
            23290898-23291000
          Length = 1724

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 20/58 (34%), Positives = 34/58 (58%)
 Frame = -3

Query: 277  KRNIDGARNGQTLVDDHNRPLLAKYVVKITILLLFDINKNITLILNKHTSISFYRSKI 104
            KRN+DGA +  T+V+  +    A+Y+ +I   L   +++NITL+   H S+    SK+
Sbjct: 1185 KRNVDGALSFSTVVEQLSNQ--AEYLSEIFKDLSGYMDENITLV---HHSLQLASSKV 1237


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,641,977
Number of Sequences: 37544
Number of extensions: 249989
Number of successful extensions: 478
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 469
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 478
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)