Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1701
         (705 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067608-15|AAO38679.1|  470|Caenorhabditis elegans Hypothetical...    29   2.4  
Z70783-1|CAA94852.2|  765|Caenorhabditis elegans Hypothetical pr...    29   3.2  
AF026206-1|AAK39306.1|  260|Caenorhabditis elegans Hypothetical ...    28   7.5  
Z81091-2|CAB03143.2| 2972|Caenorhabditis elegans Hypothetical pr...    27   9.9  

>AF067608-15|AAO38679.1|  470|Caenorhabditis elegans Hypothetical
           protein B0511.14b protein.
          Length = 470

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = -2

Query: 158 HYFNFKQTYKHLFLPLKNKKRCKYIKNSNAFCYCFKELYSL 36
           H+F  K   K  F+ L+ KK+ K+ ++   F  C +E  ++
Sbjct: 417 HFFGLKYLQKLTFMSLEIKKKTKFYQSHLLFRCCIREFLTI 457


>Z70783-1|CAA94852.2|  765|Caenorhabditis elegans Hypothetical
           protein ZK856.1 protein.
          Length = 765

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 14/59 (23%), Positives = 32/59 (54%)
 Frame = +1

Query: 400 CDICVRKTTTTYLLNTELANGQLFEPFEYSYYLFNQFFFINYHKSILNNFSLMHVLRDE 576
           CD+ +RKT  +  L +E  + +L +      Y+ N+  F+ +H++ L+   ++ +  D+
Sbjct: 392 CDLLLRKTQLSKKLTSEEIDEKLNQVLLVLKYVENKDVFMRFHRAHLSRRLILEMSADQ 450


>AF026206-1|AAK39306.1|  260|Caenorhabditis elegans Hypothetical
           protein T28B4.2 protein.
          Length = 260

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 11/32 (34%), Positives = 23/32 (71%)
 Frame = -2

Query: 698 PISDQFFFKINVQNCKSLVRTVFFFMFFPYNL 603
           P + +FFF +  +NCK+++RT+ +++  P+ L
Sbjct: 86  PTNAEFFFSL--RNCKTVMRTI-YYVISPFQL 114


>Z81091-2|CAB03143.2| 2972|Caenorhabditis elegans Hypothetical
           protein F55H12.3 protein.
          Length = 2972

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +1

Query: 19  VEQNAGNEYNSLKQ*QNAFEFFIYLHLFLFLS 114
           V  NA NE N +   +++F  FIY  +  FLS
Sbjct: 45  VSGNAENERNMISDDKHSFSLFIYSFISCFLS 76


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,272,487
Number of Sequences: 27780
Number of extensions: 278888
Number of successful extensions: 676
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 676
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)