Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1700X
         (449 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8I367 Cluster: Putative uncharacterized protein PFI040...    33   3.8  
UniRef50_Q8D3I3 Cluster: SurA protein; n=1; Wigglesworthia gloss...    32   5.0  
UniRef50_A3LNT3 Cluster: Predicted protein; n=1; Pichia stipitis...    31   8.8  

>UniRef50_Q8I367 Cluster: Putative uncharacterized protein PFI0405w;
           n=1; Plasmodium falciparum 3D7|Rep: Putative
           uncharacterized protein PFI0405w - Plasmodium falciparum
           (isolate 3D7)
          Length = 209

 Score = 32.7 bits (71), Expect = 3.8
 Identities = 21/45 (46%), Positives = 26/45 (57%), Gaps = 6/45 (13%)
 Frame = -2

Query: 118 HYFNFKQTYKHLFLP-----LKNKKR-CKYIKNSNAFCYCFKELY 2
           ++F F Q YKHL L      LK KK+  K IK  + F +CFK LY
Sbjct: 134 NFFKFIQLYKHLILKTFLFLLKEKKKIAKEIK--DLFSFCFKVLY 176


>UniRef50_Q8D3I3 Cluster: SurA protein; n=1; Wigglesworthia
           glossinidia endosymbiont of Glossina brevipalpis|Rep:
           SurA protein - Wigglesworthia glossinidia brevipalpis
          Length = 452

 Score = 32.3 bits (70), Expect = 5.0
 Identities = 22/76 (28%), Positives = 43/76 (56%)
 Frame = -3

Query: 246 NS*KETLTELVNGQTLVDDHNRPLLAKYVVKITILLLFDINKNITLILNKHTSISFYRSK 67
           NS  E+L  LV  + ++D+  +  L +Y    +  LLF++N+NI   L K+ +++  + +
Sbjct: 91  NSESESLKNLVLNKLIIDEVIKNKLNEYETFFSSDLLFNVNQNI--FLEKYINLNKKKKE 148

Query: 66  IKRDASI*KIQTRSVI 19
           I  D SI K++  + +
Sbjct: 149 I-TDKSILKLEPNNFL 163


>UniRef50_A3LNT3 Cluster: Predicted protein; n=1; Pichia
           stipitis|Rep: Predicted protein - Pichia stipitis
           (Yeast)
          Length = 434

 Score = 31.5 bits (68), Expect = 8.8
 Identities = 13/44 (29%), Positives = 28/44 (63%)
 Frame = -3

Query: 231 TLTELVNGQTLVDDHNRPLLAKYVVKITILLLFDINKNITLILN 100
           TL+  + G +   +H R +L++ +++I+ +L  ++ KNI  +LN
Sbjct: 354 TLSLFIAGVSTTTNHQRAVLSRKLIEISNVLASNVGKNILKVLN 397


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 382,586,163
Number of Sequences: 1657284
Number of extensions: 6394274
Number of successful extensions: 14869
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 14514
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14865
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 23604537544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)