Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1700X
         (449 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8C9.16c |mug63||TLDc domain protein 1|Schizosaccharomyces po...    30   0.14 
SPAC6F6.08c |cdc16|bub2|two-component GAP Cdc16|Schizosaccharomy...    26   3.1  
SPAC16E8.03 |gna1|spgna1|glucosamine-phosphate N-acetyltransfera...    25   5.4  
SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2 |Sch...    25   7.1  
SPCC132.04c |||NAD-dependent glutamate dehydrogenase |Schizosacc...    24   9.4  
SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18 |Sch...    24   9.4  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    24   9.4  

>SPAC8C9.16c |mug63||TLDc domain protein 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 188

 Score = 30.3 bits (65), Expect = 0.14
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -2

Query: 118 HYFNFKQTYKHLFLPLKNKKRCKYIKNSNAFCYCFK 11
           HYF  ++T+   + P K      ++ NSN   YC K
Sbjct: 96  HYFGSEETFLWKYFPPKKYVHYPFVGNSNFVAYCTK 131


>SPAC6F6.08c |cdc16|bub2|two-component GAP Cdc16|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 299

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -3

Query: 180 PLLAKYVVKITILLLFDINKNITLILNKH 94
           PL AK ++KITILL+  +   +  +L +H
Sbjct: 257 PLNAKNIMKITILLISKLPPELYNLLARH 285


>SPAC16E8.03 |gna1|spgna1|glucosamine-phosphate
           N-acetyltransferase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 111

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = -3

Query: 192 DHNRPLLAKYVVKITILLLFDINKNITLILNKHTSISFY 76
           DH R  + K +V   I L F +N    ++    +++ FY
Sbjct: 52  DHQRKAIGKLMVLTLIKLAFSLNSYKVILDCSDSNVGFY 90


>SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 681

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +1

Query: 295 ISHFSGXXXXXXXLSYVTRTRAVIFVYEKLPLHTYCT 405
           +S F+G       LS VT+   V+   +KL +H Y T
Sbjct: 6   LSTFTGRSLLIDQLSSVTQGTPVLDFIDKLRIHFYTT 42


>SPCC132.04c |||NAD-dependent glutamate dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1106

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -3

Query: 213 NGQTLVDDHNRPLLAKYVVKITILLLFDINKNI 115
           N + L+DDH RP   KY+V+   L +    K++
Sbjct: 890 NVEQLIDDHGRPAF-KYLVEGANLFITQDAKSV 921


>SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1316

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -2

Query: 253  GKQFLKRNIDGARKRSNAGRRSQQ 182
            G QFL+ +   +R+RS + RRS++
Sbjct: 993  GSQFLRSSHGRSRERSTSARRSRR 1016


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
           Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = +2

Query: 284 YKTKSLISPVFFFSLSSCHM*RALGL*YLCTKNYHYIPTAHGTRKRAT 427
           YK K LIS ++   + S +    L + ++    YH +P   G R   T
Sbjct: 809 YKPKILISQIWNAIVISMYREHLLSIDHVQRLLYHQVPAEEGRRTLRT 856


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,685,567
Number of Sequences: 5004
Number of extensions: 30044
Number of successful extensions: 70
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)