Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1700X
         (449 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0109 + 6830802-6833412,6833491-6833861                           28   3.0  
07_03_0297 - 16383159-16383626                                         27   5.3  
04_01_0109 + 1120981-1121249,1121326-1121536,1121683-1121880           27   5.3  
03_01_0051 + 445035-445303,445380-445590,445737-445930,446151-44...    27   5.3  
11_02_0063 + 7916048-7917135,7917225-7918690,7920177-7920238,792...    27   7.0  
11_02_0062 - 7909343-7909413,7909509-7910974,7911064-7912088,791...    27   7.0  
06_02_0178 + 12652654-12652877,12652964-12653140,12653141-126532...    27   9.2  

>02_02_0109 + 6830802-6833412,6833491-6833861
          Length = 993

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = -1

Query: 290 SYKREVKERSVTRQTILK-KKH*RSS*TVKRW*TITTGHC 174
           SY +   + +   Q +L+ K H  SS  + RW + TT HC
Sbjct: 23  SYPKSTNQSNEEHQILLELKNHWGSSPALGRWNSTTTAHC 62


>07_03_0297 - 16383159-16383626
          Length = 155

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 33  FEFFIYLHLFLFLSGRKRCLYVCLKLK 113
           F+F  +LHL L + G    L +CL+ K
Sbjct: 7   FDFVFHLHLMLMILGYANALSLCLQRK 33


>04_01_0109 + 1120981-1121249,1121326-1121536,1121683-1121880
          Length = 225

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -2

Query: 97  TYKHLFLPLKNKKRCKYIKNSNAFCYCFKEL 5
           ++KHL L   N +    +K    FC C+KEL
Sbjct: 88  SWKHLALGWANVEPDTPVKAGTRFCICYKEL 118


>03_01_0051 +
           445035-445303,445380-445590,445737-445930,446151-446228,
           447049-447141,448495-448525,448729-449058
          Length = 401

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -2

Query: 97  TYKHLFLPLKNKKRCKYIKNSNAFCYCFKEL 5
           ++KHL L   N +    +K    FC C+KEL
Sbjct: 88  SWKHLALGWANVEPDTPVKAGTRFCICYKEL 118


>11_02_0063 +
           7916048-7917135,7917225-7918690,7920177-7920238,
           7921808-7922407
          Length = 1071

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +3

Query: 12  LKQ*QNAFEFFIYLHLFLFLSGRKRCLYVCLKLK 113
           LKQ   +FEF + +HL + L G+   L  CL+ K
Sbjct: 560 LKQ-MESFEFVLIMHLMIRLLGKTNDLSQCLQKK 592


>11_02_0062 -
           7909343-7909413,7909509-7910974,7911064-7912088,
           7912300-7912809,7913418-7913441,7913617-7913673
          Length = 1050

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +3

Query: 12  LKQ*QNAFEFFIYLHLFLFLSGRKRCLYVCLKLK 113
           LKQ   +FEF + +HL + L G+   L  CL+ K
Sbjct: 736 LKQ-MESFEFVLIMHLMIRLLGKTNDLSQCLQKK 768


>06_02_0178 +
           12652654-12652877,12652964-12653140,12653141-12653214,
           12653424-12653530,12653637-12653792,12653933-12654019,
           12654247-12654344,12654467-12654554,12654810-12654911
          Length = 370

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 11/37 (29%), Positives = 23/37 (62%)
 Frame = +2

Query: 38  IFYILASLFIFER*KEMLVCLFKIKVMFLLMSNNNKI 148
           +F +LASLF+F      +V  F++  M + +++ +K+
Sbjct: 58  VFLVLASLFLFPLRVAAMVVAFQLLFMLIPLNDKDKL 94


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,625,573
Number of Sequences: 37544
Number of extensions: 155104
Number of successful extensions: 315
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 314
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 315
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)