Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1700X
         (449 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          23   1.2  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      23   1.2  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    23   1.5  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    22   3.6  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    21   8.2  

>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -2

Query: 190 SQQATASEIRGQNYYFI 140
           SQ     EIRGQ YYF+
Sbjct: 248 SQYHMPKEIRGQLYYFL 264


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -2

Query: 190 SQQATASEIRGQNYYFI 140
           SQ     EIRGQ YYF+
Sbjct: 248 SQYHMPKEIRGQLYYFL 264


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +1

Query: 376 EKLPLHTYCTRNSQTGNFSNRSN 444
           ++L  +T+C  N+Q  N  N +N
Sbjct: 406 KELIRNTHCVNNNQNDNIQNTNN 428


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +1

Query: 289 DKISHFSGXXXXXXXLSYVTRTRAVIFVYE 378
           DK+SHF         LS + R+  V F Y+
Sbjct: 54  DKLSHFIESGITAIWLSPINRSPMVDFGYD 83


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 20.6 bits (41), Expect = 8.2
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = -2

Query: 256 LGKQFLKRNIDGARKRSNAGRRSQQATASE 167
           LG +  K    G+R RSN    S+    S+
Sbjct: 75  LGSERSKSRSPGSRDRSNTSNTSKTVILSD 104


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,583
Number of Sequences: 438
Number of extensions: 2165
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11820384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)