Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1700X
         (449 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g44840.1 68418.m05495 glycoside hydrolase family 28 protein /...    27   5.9  
At3g14980.1 68416.m01894 PHD finger transcription factor, putati...    27   7.7  

>At5g44840.1 68418.m05495 glycoside hydrolase family 28 protein /
           polygalacturonase (pectinase) family protein similar to
           polygalacturonase [Persea americana] GI:166951; contains
           PF00295: Glycosyl hydrolases family 28
           (polygalacturonases)
          Length = 381

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 363 DICVRKTTTTYLLHTELANGQLFEPFEYG 449
           +I +R      LLH+ L NGQ+++  E+G
Sbjct: 2   EIILRGVFLLTLLHSILVNGQIYDVLEFG 30


>At3g14980.1 68416.m01894 PHD finger transcription factor, putative
           contains Pfam profile: PF00628 PHD-finger
          Length = 1189

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
 Frame = -3

Query: 249 NNS*KETLTELVNGQTLVD----DHNRPLLAKYVVKITILLLFDINKNITLILNKHTSIS 82
           NN  K +  EL+  +T +     +  RPLL KYV K+     + I K       KH   +
Sbjct: 214 NNGSKVSPNELIMSKTCLKIDPKEDPRPLLYKYVCKVLTAARWKIEKRERSAGRKHVD-T 272

Query: 81  FYRS 70
           FY S
Sbjct: 273 FYIS 276


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,359,795
Number of Sequences: 28952
Number of extensions: 141961
Number of successful extensions: 321
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 320
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 321
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 732537840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)