Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1699
         (767 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr...    28   1.7  
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...    27   3.0  
SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31 |...    27   3.0  
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   3.9  
SPBC8D2.13 |||SHQ1 family protein|Schizosaccharomyces pombe|chr ...    26   5.2  
SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...    25   9.0  

>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1471

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = -3

Query: 573  SRHAFHFEGWNNSYVFLYFYCLMGGRAHGPLDAKCLPEPID 451
            S+H  + E   +S V     C   G  +  L++KCLPE ID
Sbjct: 1218 SKHFSNLENSFHSLVQKLLSCCTEGSINALLNSKCLPEFID 1258


>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +1

Query: 418 LKMGGRINAFDVYWFW*AFGIKRAVSSSTHQAIKIKKH 531
           L  GG +  F V W   AFG+  +V  ST +A ++KK+
Sbjct: 240 LAPGGHLGRF-VIWTKSAFGLLDSVFGSTTEAAQLKKN 276


>SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1032

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = -2

Query: 253 DFVAPQSINKRPKLLYKINKRNPSVGGHQNCYFYLIPKIFIFI 125
           DF   +++ ++ K +YK+ KR      H N Y  L PK F F+
Sbjct: 670 DFGLSENVEEK-KEVYKLTKRMSFEQKHGNLYEQLQPKKFEFV 711


>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = +3

Query: 621 MPPVNADWLSQYADTIFGESSCESPVMTPTMTQPHFRVLISILLNSHSR 767
           +P  ++  LS  + T    SS  SP+ + + T P     I+ L++S S+
Sbjct: 41  IPSSSSSMLSSSSATAISSSSSSSPLSSSSFTSPASSSFITSLVSSSSQ 89


>SPBC8D2.13 |||SHQ1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 451

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = -2

Query: 229 NKRPKLLYKINKRNPSVGGHQNCYFYLIPKIFIFIY 122
           ++  + L K+ KR+  +   +N Y  L+P IF + Y
Sbjct: 257 SEEKEALAKLPKRSYLIDNPKNVYLCLVPLIFAYAY 292


>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +1

Query: 418 LKMGGRINAFDVYWFW*AFGIKRAVSSSTHQAIKIKKH 531
           L  GG +  F V W   AFG+  +V  ST +  ++KK+
Sbjct: 240 LAPGGHLGRF-VIWTKSAFGLLDSVFGSTTEVAQLKKN 276


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,417,420
Number of Sequences: 5004
Number of extensions: 75548
Number of successful extensions: 163
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)