Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1699
         (767 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0399 - 5214183-5214206,5215437-5215502,5219537-5219635,521...    31   1.3  
11_01_0650 - 5265106-5265305,5265972-5266049,5266391-5266544,526...    30   1.8  
03_02_0591 - 9682476-9682487,9682805-9682885,9683085-9683192,968...    29   4.1  

>04_01_0399 -
           5214183-5214206,5215437-5215502,5219537-5219635,
           5219746-5219817,5219918-5220491,5220575-5220687,
           5220842-5220941,5221059-5221181,5221268-5221335,
           5221461-5221610,5221715-5221858,5222097-5222288,
           5222710-5222794,5222892-5223043,5223138-5223296,
           5223552-5223605,5223698-5223836,5223955-5224088,
           5224200-5225117
          Length = 1121

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -1

Query: 575 KADT-RSILRDGTTVMCFFIFIA*WVDELTARLMPNA 468
           KA T RS +R GT ++C    +  W DEL A   P A
Sbjct: 586 KAQTSRSSVRGGTLIICPMALLGQWKDELEAHSTPGA 622


>11_01_0650 -
           5265106-5265305,5265972-5266049,5266391-5266544,
           5266635-5266701,5266723-5266796,5266910-5267794
          Length = 485

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 24/69 (34%), Positives = 30/69 (43%)
 Frame = -2

Query: 520 FLLLDGWTSSRPA*CQMLTRTNRHQTR*CGRPS*VMNSNSQFLQYNSCPAL*TETHYCFT 341
           FL L+ W    P     L   +RH TR        ++ N  FL ++SCPAL    H  F 
Sbjct: 125 FLQLENWEFYDPVPIDELPLVSRHLTR---LQLYGISLNDSFLNFSSCPAL---EHLLF- 177

Query: 340 AEICRFHSA 314
            E C F  A
Sbjct: 178 -EFCFFECA 185


>03_02_0591 -
           9682476-9682487,9682805-9682885,9683085-9683192,
           9683307-9683383,9683495-9683603,9683696-9683794,
           9684208-9684294,9684454-9684514,9684646-9684720,
           9684826-9684854
          Length = 245

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 14/62 (22%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
 Frame = +2

Query: 188 IPFVYFIQKFRSFIYRLRRYEVSGSASHIIKI--ELAKVTIWVVRTMEPAYFCREAVMRF 361
           I +V FI++F+ F   ++ Y+++    ++ K   E+ K+  +     +P +       R 
Sbjct: 182 IAYVPFIERFQIFFSGIKNYDITKGRPNLQKFIEEVNKIHAYTETKQDPQFLLEHTKKRL 241

Query: 362 GL 367
           GL
Sbjct: 242 GL 243


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,799,153
Number of Sequences: 37544
Number of extensions: 481849
Number of successful extensions: 846
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 826
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 845
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)