Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1699
         (767 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC051675-1|AAH51675.1|  515|Homo sapiens gap junction protein, a...    26   3.5  
AL139260-3|CAI23051.1|  515|Homo sapiens gap junction protein, a...    26   3.5  
AF271261-1|AAK55516.1|  515|Homo sapiens connexin 58 protein.          26   3.5  
AF179597-1|AAG09406.1|  515|Homo sapiens connexin 59 protein.          26   3.5  
DQ926045-1|ABI50710.1|  126|Homo sapiens immunoglobulin heavy ch...    31   4.5  

>BC051675-1|AAH51675.1|  515|Homo sapiens gap junction protein,
           alpha 10, 59kDa protein.
          Length = 515

 Score = 25.8 bits (54), Expect(2) = 3.5
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +3

Query: 591 NMDQPLQAYFMPPVNADWLSQYADTIFGESS 683
           NM Q  Q  F  P N DW  ++    +G S+
Sbjct: 400 NMRQSPQTVFSLPANCDWKPRWLRATWGSST 430



 Score = 24.2 bits (50), Expect(2) = 3.5
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +3

Query: 501 HPSSNKNKETHNCCSIPQNGTRV 569
           H SSN NK+TH       NG ++
Sbjct: 345 HISSNNNKDTHKIFGKELNGNQL 367


>AL139260-3|CAI23051.1|  515|Homo sapiens gap junction protein,
           alpha 10, 59kDa protein.
          Length = 515

 Score = 25.8 bits (54), Expect(2) = 3.5
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +3

Query: 591 NMDQPLQAYFMPPVNADWLSQYADTIFGESS 683
           NM Q  Q  F  P N DW  ++    +G S+
Sbjct: 400 NMRQSPQTVFSLPANCDWKPRWLRATWGSST 430



 Score = 24.2 bits (50), Expect(2) = 3.5
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +3

Query: 501 HPSSNKNKETHNCCSIPQNGTRV 569
           H SSN NK+TH       NG ++
Sbjct: 345 HISSNNNKDTHKIFGKELNGNQL 367


>AF271261-1|AAK55516.1|  515|Homo sapiens connexin 58 protein.
          Length = 515

 Score = 25.8 bits (54), Expect(2) = 3.5
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +3

Query: 591 NMDQPLQAYFMPPVNADWLSQYADTIFGESS 683
           NM Q  Q  F  P N DW  ++    +G S+
Sbjct: 400 NMRQSPQTVFSLPANCDWKPRWLRATWGSST 430



 Score = 24.2 bits (50), Expect(2) = 3.5
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +3

Query: 501 HPSSNKNKETHNCCSIPQNGTRV 569
           H SSN NK+TH       NG ++
Sbjct: 345 HISSNNNKDTHKIFGKELNGNQL 367


>AF179597-1|AAG09406.1|  515|Homo sapiens connexin 59 protein.
          Length = 515

 Score = 25.8 bits (54), Expect(2) = 3.5
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +3

Query: 591 NMDQPLQAYFMPPVNADWLSQYADTIFGESS 683
           NM Q  Q  F  P N DW  ++    +G S+
Sbjct: 400 NMRQSPQTVFSLPANCDWKPRWLRATWGSST 430



 Score = 24.2 bits (50), Expect(2) = 3.5
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +3

Query: 501 HPSSNKNKETHNCCSIPQNGTRV 569
           H SSN NK+TH       NG ++
Sbjct: 345 HISSNNNKDTHKIFGKELNGNQL 367


>DQ926045-1|ABI50710.1|  126|Homo sapiens immunoglobulin heavy chain
           variable region protein.
          Length = 126

 Score = 31.1 bits (67), Expect = 4.5
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -2

Query: 412 NSNSQFLQYNSCPAL*TETHYCFTAEICRFHSAYHPNCNF 293
           + N+ +LQ NS     T  +YC    +  F SAYH  C++
Sbjct: 75  SKNTLYLQMNSLRVEDTAIYYCAIGVVGDFWSAYHGACDY 114


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 119,626,058
Number of Sequences: 237096
Number of extensions: 2688759
Number of successful extensions: 12725
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12725
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9255747988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)