Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1699
         (767 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE013599-3154|AAF46692.1|  308|Drosophila melanogaster CG9441-PC...    35   0.14 
U01119-1|AAC04309.1|  308|Drosophila melanogaster GTP cyclohydro...    33   0.43 
AF221715-1|AAF34661.1| 5554|Drosophila melanogaster split ends l...    29   9.3  
AF188205-1|AAF13218.1| 5533|Drosophila melanogaster Spen RNP mot...    29   9.3  
AF184612-1|AAF26299.1| 5476|Drosophila melanogaster split ends p...    29   9.3  
AE014134-58|AAN10511.1| 5476|Drosophila melanogaster CG18497-PC,...    29   9.3  
AE014134-57|AAF51534.2| 5533|Drosophila melanogaster CG18497-PB,...    29   9.3  
AE014134-56|AAF51535.2| 5560|Drosophila melanogaster CG18497-PA,...    29   9.3  

>AE013599-3154|AAF46692.1|  308|Drosophila melanogaster CG9441-PC,
           isoform C protein.
          Length = 308

 Score = 34.7 bits (76), Expect = 0.14
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -2

Query: 259 PGDFVAPQSINKRPKLLYKINKRNPSVGGHQNCYFY 152
           P   + P + N+RP+L+ K N  +P   GH+ C F+
Sbjct: 74  PAPALVPLAGNQRPRLILKTNGSSPDSDGHEKCTFH 109


>U01119-1|AAC04309.1|  308|Drosophila melanogaster GTP
           cyclohydrolase I protein.
          Length = 308

 Score = 33.1 bits (72), Expect = 0.43
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -2

Query: 247 VAPQSINKRPKLLYKINKRNPSVGGHQNCYFY 152
           + P + N+RP+L+ K N  +P   GH+ C F+
Sbjct: 77  LVPLAGNQRPRLILKTNGSSPDSDGHEKCTFH 108


>AF221715-1|AAF34661.1| 5554|Drosophila melanogaster split ends long
            isoform protein.
          Length = 5554

 Score = 28.7 bits (61), Expect = 9.3
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = -2

Query: 247  VAPQSINKRPKLLYKINKRNPSV 179
            VAP + ++RP+L+  INK  PS+
Sbjct: 4437 VAPSAEDQRPRLILTINKTQPSI 4459


>AF188205-1|AAF13218.1| 5533|Drosophila melanogaster Spen RNP motif
            protein long isoformprotein.
          Length = 5533

 Score = 28.7 bits (61), Expect = 9.3
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = -2

Query: 247  VAPQSINKRPKLLYKINKRNPSV 179
            VAP + ++RP+L+  INK  PS+
Sbjct: 4443 VAPSAEDQRPRLILTINKTQPSI 4465


>AF184612-1|AAF26299.1| 5476|Drosophila melanogaster split ends
            protein.
          Length = 5476

 Score = 28.7 bits (61), Expect = 9.3
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = -2

Query: 247  VAPQSINKRPKLLYKINKRNPSV 179
            VAP + ++RP+L+  INK  PS+
Sbjct: 4386 VAPSAEDQRPRLILTINKTQPSI 4408


>AE014134-58|AAN10511.1| 5476|Drosophila melanogaster CG18497-PC,
            isoform C protein.
          Length = 5476

 Score = 28.7 bits (61), Expect = 9.3
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = -2

Query: 247  VAPQSINKRPKLLYKINKRNPSV 179
            VAP + ++RP+L+  INK  PS+
Sbjct: 4386 VAPSAEDQRPRLILTINKTQPSI 4408


>AE014134-57|AAF51534.2| 5533|Drosophila melanogaster CG18497-PB,
            isoform B protein.
          Length = 5533

 Score = 28.7 bits (61), Expect = 9.3
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = -2

Query: 247  VAPQSINKRPKLLYKINKRNPSV 179
            VAP + ++RP+L+  INK  PS+
Sbjct: 4443 VAPSAEDQRPRLILTINKTQPSI 4465


>AE014134-56|AAF51535.2| 5560|Drosophila melanogaster CG18497-PA,
            isoform A protein.
          Length = 5560

 Score = 28.7 bits (61), Expect = 9.3
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = -2

Query: 247  VAPQSINKRPKLLYKINKRNPSV 179
            VAP + ++RP+L+  INK  PS+
Sbjct: 4443 VAPSAEDQRPRLILTINKTQPSI 4465


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 36,367,390
Number of Sequences: 53049
Number of extensions: 813516
Number of successful extensions: 1714
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1714
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3540671772
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)