Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1693X
         (437 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q5P8P4 Cluster: Putative uncharacterized protein; n=1; ...    33   2.7  
UniRef50_A5V577 Cluster: TonB-dependent receptor, plug; n=2; Sph...    31   8.1  
UniRef50_A5K0R6 Cluster: Putative uncharacterized protein; n=4; ...    31   8.1  

>UniRef50_Q5P8P4 Cluster: Putative uncharacterized protein; n=1;
           Azoarcus sp. EbN1|Rep: Putative uncharacterized protein
           - Azoarcus sp. (strain EbN1) (Aromatoleum aromaticum
           (strain EbN1))
          Length = 114

 Score = 33.1 bits (72), Expect = 2.7
 Identities = 15/32 (46%), Positives = 17/32 (53%)
 Frame = +1

Query: 103 FTLPTLTVKGPAGASRLPPRTSPWLPMTRSSG 198
           F LP   V+G    S LPPR +PW P    SG
Sbjct: 71  FRLPLAIVQGRLQRSWLPPRGAPWFPGREDSG 102


>UniRef50_A5V577 Cluster: TonB-dependent receptor, plug; n=2;
           Sphingomonas wittichii RW1|Rep: TonB-dependent receptor,
           plug - Sphingomonas wittichii RW1
          Length = 856

 Score = 31.5 bits (68), Expect = 8.1
 Identities = 16/41 (39%), Positives = 19/41 (46%)
 Frame = -1

Query: 221 GRWRLYP*PDDRVIGNHGEVRGGRRLAPAGPFTVSVGNVKR 99
           GRWR      DR +G+     G    APAGP  + V   KR
Sbjct: 136 GRWRAADRSPDRELGSGASAGGASAAAPAGPSDIIVTAQKR 176


>UniRef50_A5K0R6 Cluster: Putative uncharacterized protein; n=4;
            Eukaryota|Rep: Putative uncharacterized protein -
            Plasmodium vivax
          Length = 4697

 Score = 31.5 bits (68), Expect = 8.1
 Identities = 15/58 (25%), Positives = 27/58 (46%)
 Frame = +2

Query: 248  FKSSSRHGDRTHHAKSHSRDLGNSPLTANATGNTSRDLEDSPHKKILSGLMAPGEYAS 421
            F+  +  GD  HH ++H  ++G+  +  +A  N + +   S  K  LS +    E  S
Sbjct: 864  FEQMNLRGDHLHHVEAHQANMGHMHMGVSANVNANANAHVSNAKMYLSNVSLASEKLS 921


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 403,633,599
Number of Sequences: 1657284
Number of extensions: 7093549
Number of successful extensions: 18313
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 17822
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18306
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 21918499148
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)