Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1693X
         (437 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces pom...    25   6.7  
SPBC16G5.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   6.7  
SPAC20H4.07 |rhp57||RecA family ATPase Rhp57|Schizosaccharomyces...    25   6.7  
SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual            24   8.9  
SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyce...    24   8.9  
SPCC553.04 |cyp9||WD repeat containing cyclophilin family peptid...    24   8.9  

>SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1325

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 279  RITPSLIHEISVTVLLPPTPRE 344
            R TP  IHE+ V  +L   P+E
Sbjct: 944  RSTPPKIHEVGVNKMLDVVPKE 965


>SPBC16G5.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 126

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = +1

Query: 343 KYI*RFRRFAAQEDSVRSDGSRRICQCRI 429
           +YI ++  F A+E+   +  +R +C C I
Sbjct: 38  RYIRKYENFFAKENENLNTAARLVCDCPI 66


>SPAC20H4.07 |rhp57||RecA family ATPase Rhp57|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 354

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +2

Query: 275 RTHHAKSHSRDLGNSPLTANATGNTSRDLEDSPHK 379
           R + +KSH RDL N     N  G  +  L    H+
Sbjct: 217 RYNRSKSHFRDLDNIAKRGNQLGKLAMTLRTLAHQ 251


>SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 421

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -1

Query: 323 EDCYRDLVNETWRDA 279
           E CYRD +NE  R+A
Sbjct: 44  EHCYRDNINEKHREA 58


>SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 481

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = +1

Query: 154 PPRTSPWLPMTRSSGQGYNLHLP 222
           PP   PW P++    Q + + LP
Sbjct: 312 PPTAEPWEPISAPKKQEFGVSLP 334


>SPCC553.04 |cyp9||WD repeat containing cyclophilin family
           peptidyl-prolyl cis-trans isomerase
           Cyp9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 610

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -3

Query: 429 YTALAYSPGAIRPDRIFLCGESSKSLDVFPV 337
           + A+  S    + +R+F+ G   KSL VF V
Sbjct: 89  HNAMLLSAELSQDERLFITGADDKSLKVFDV 119


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,614,867
Number of Sequences: 5004
Number of extensions: 27883
Number of successful extensions: 66
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 158122380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)