Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1693X
         (437 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0484 - 25570798-25570964,25572641-25572679,25572718-255728...    28   2.9  
06_01_0661 - 4807712-4807759,4807857-4807995,4808107-4808351,480...    28   3.8  
09_01_0057 - 916973-917287,917371-917495,917587-918241                 27   5.0  
08_01_0539 + 4679392-4681282,4682060-4682104,4682403-4683560,468...    27   5.0  
04_03_0636 + 18223229-18223489,18223975-18224519,18225018-182251...    27   5.0  
01_01_1024 + 8083372-8083758,8083970-8084149,8084261-8084590,808...    27   5.0  
10_02_0156 + 5946160-5946423,5946558-5947063,5947430-5947486,594...    27   8.7  

>04_04_0484 -
           25570798-25570964,25572641-25572679,25572718-25572869,
           25572975-25573090,25573196-25573363,25574202-25574300,
           25574450-25574650,25575369-25575689
          Length = 420

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -3

Query: 435 GLYTALAYSPGAIRPDRIFLCGESSKSLDVFPVALAVRGL 316
           GL TA+  +       ++FLCG +SK      +AL  RG+
Sbjct: 134 GLATAVVLNSIPFGTKQVFLCGSNSKVTRATAIALCQRGV 173


>06_01_0661 -
           4807712-4807759,4807857-4807995,4808107-4808351,
           4808482-4808800,4809140-4809364,4809453-4809619,
           4809702-4809818,4809903-4810076,4810173-4810268,
           4810351-4810567,4810663-4810781,4810931-4811123,
           4811207-4811358,4811448-4811568,4811980-4812074
          Length = 808

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +2

Query: 293 SHSRDLGNSPLTANATGNTSRDLEDSPHKKILSGLM 400
           +H RDL N  +     GN S+D E+    K + GL+
Sbjct: 593 AHLRDLANLVIVCGDHGNQSKDREEQAEFKKMYGLI 628


>09_01_0057 - 916973-917287,917371-917495,917587-918241
          Length = 364

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 16/39 (41%), Positives = 18/39 (46%)
 Frame = -3

Query: 435 GLYTALAYSPGAIRPDRIFLCGESSKSLDVFPVALAVRG 319
           GLY+A A   G I     F C  SS S+D    AL   G
Sbjct: 295 GLYSAPASPSGVIGASACFSCDSSSSSVDSLFAALEPPG 333


>08_01_0539 +
           4679392-4681282,4682060-4682104,4682403-4683560,
           4683834-4684204,4684290-4684835,4684927-4685027,
           4685117-4685933,4686025-4686213,4686313-4686384,
           4686477-4686587,4686647-4686652,4686694-4686794,
           4687714-4687813,4687891-4687986,4688157-4688273,
           4688367-4688492,4688566-4688619,4688745-4688992,
           4689087-4689195,4689284-4689583,4689799-4689963
          Length = 2240

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +2

Query: 257 SSRHGDRTHHAKSHSRDLGNSPLTANATGNTSRDLEDS-PHKK 382
           S  H  R HHA+    +L    L   A  ++SRDLE S P KK
Sbjct: 50  SHSHSHRKHHAELEEGEL----LNGEADNSSSRDLERSMPPKK 88


>04_03_0636 +
           18223229-18223489,18223975-18224519,18225018-18225104,
           18225187-18225243,18225391-18225629,18225809-18225942,
           18226175-18226261,18226382-18226438
          Length = 488

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = +1

Query: 94  WIRFTLPTLTVKGPAGAS-RLPPRTSPWLPMTRSSGQGYNLHLPYIMLLV 240
           +IR+ +P L   GP     R     +  +P+  SSG     HLP   LLV
Sbjct: 155 YIRWMIPALLAYGPLQCHVRFLQTQNAVMPVMLSSGAAAACHLPVCWLLV 204


>01_01_1024 +
           8083372-8083758,8083970-8084149,8084261-8084590,
           8084679-8084792,8084942-8085682
          Length = 583

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 15/52 (28%), Positives = 24/52 (46%)
 Frame = +2

Query: 254 SSSRHGDRTHHAKSHSRDLGNSPLTANATGNTSRDLEDSPHKKILSGLMAPG 409
           SS   G+      + S + G SP  +++TGN  ++  DSP     +    PG
Sbjct: 208 SSGAGGEAAEEPSNSSTEAG-SPRRSSSTGNKDQERGDSPDAPSTAAAWLPG 258


>10_02_0156 +
           5946160-5946423,5946558-5947063,5947430-5947486,
           5947664-5947902,5948200-5948318,5948400-5948486,
           5951757-5951816
          Length = 443

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = +1

Query: 94  WIRFTLPTLTVKGPAGAS-RLPPRTSPWLPMTRSSGQGYNLHLPYIMLLVSRL 249
           +IR+ +PTL V GP     R     S  +P+  S+G     H+    LLV RL
Sbjct: 143 YIRWMIPTLFVYGPLQCHVRFLQTQSAVVPVMLSAGATAANHVLVCWLLVHRL 195


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,002,151
Number of Sequences: 37544
Number of extensions: 202473
Number of successful extensions: 550
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 550
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 823860276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)