Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1693X
         (437 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34911| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.1  
SB_26976| Best HMM Match : Exo_endo_phos (HMM E-Value=5.3)             27   6.8  
SB_25009| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.8  
SB_21701| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.9  

>SB_34911| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 904

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
 Frame = +2

Query: 266 HGDRTHHAKSHSRDLGNSPLT----ANATGNTSRDLEDSPHKKI 385
           +GDRT+H     R   +SP++    A +T + S     SPHK I
Sbjct: 769 NGDRTNHVSVIHRSPNHSPISIDEPAESTSSASAKDRVSPHKLI 812


>SB_26976| Best HMM Match : Exo_endo_phos (HMM E-Value=5.3)
          Length = 297

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 16/57 (28%), Positives = 22/57 (38%), Gaps = 1/57 (1%)
 Frame = +2

Query: 248 FKSSSRHGDRTHHAKSHSRDLGN-SPLTANATGNTSRDLEDSPHKKILSGLMAPGEY 415
           F +    G    H     RD G  SP+ A       RDL+    +K++     PG Y
Sbjct: 52  FSNPQNIGFHAVHRLGKPRDGGKPSPIIARVISRQDRDLDFRKKRKLVGSTCYPGVY 108


>SB_25009| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 641

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 16/51 (31%), Positives = 27/51 (52%)
 Frame = +3

Query: 264 VTAIERITPSLIHEISVTVLLPPTPREIHLEI*KIRRTRRFCQV*WLQANM 416
           VT  E I P++    + T + PP+   +H+E  K  RT ++C + W +  M
Sbjct: 348 VTKTEFIRPTVTCTETTTKIRPPSYDHVHVE--KRSRTIKYCII-WSRGQM 395


>SB_21701| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1906

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +2

Query: 251  KSSSRHGDRTHHAKSHSRDLGNSPLTANATGNTSRDLED 367
            ++SS HGD+      H        LT  A+  T+++L+D
Sbjct: 1257 EASSLHGDQDSLTDEHPDHTSEENLTFQASPETNKELDD 1295


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,363,039
Number of Sequences: 59808
Number of extensions: 234531
Number of successful extensions: 603
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 603
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 847047381
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)