Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1688
         (776 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        25   0.68 
AY052394-1|AAL15468.1|  228|Tribolium castaneum tryptophan oxyge...    23   3.6  
AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan oxyge...    23   3.6  
AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan oxyge...    23   3.6  
AM292368-1|CAL23180.2|  387|Tribolium castaneum gustatory recept...    22   6.3  
AM292347-1|CAL23159.2|  387|Tribolium castaneum gustatory recept...    22   6.3  
AM292327-1|CAL23139.2|  387|Tribolium castaneum gustatory recept...    22   6.3  

>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 25.0 bits (52), Expect = 0.68
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +2

Query: 212 LCSNGYKPCVKDAQDTTLNGCKLRIL 289
           + +NG +PCV   Q    +GC  +IL
Sbjct: 66  MAANGIRPCVISRQLRVSHGCVSKIL 91


>AY052394-1|AAL15468.1|  228|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 228

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +3

Query: 546 TGGSQGYTTLFHFLNNNWAVLKEKFASKTNL 638
           TGGS GY  L   L++ + V  + F   T L
Sbjct: 164 TGGSSGYQYLRSTLSDRYKVFVDLFNLSTFL 194


>AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +3

Query: 546 TGGSQGYTTLFHFLNNNWAVLKEKFASKTNL 638
           TGGS GY  L   L++ + V  + F   T L
Sbjct: 324 TGGSSGYQYLRSTLSDRYKVFVDLFNLSTFL 354


>AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +3

Query: 546 TGGSQGYTTLFHFLNNNWAVLKEKFASKTNL 638
           TGGS GY  L   L++ + V  + F   T L
Sbjct: 324 TGGSSGYQYLRSTLSDRYKVFVDLFNLSTFL 354


>AM292368-1|CAL23180.2|  387|Tribolium castaneum gustatory receptor
           candidate 47 protein.
          Length = 387

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +1

Query: 448 IEEYKINRLLNITLLEGNGNSLIRISSSYSVCLLVD 555
           I  Y++  L    LL+  GN+  R  S+YS+ ++ +
Sbjct: 224 IAHYRVLWLSLSDLLQKMGNAYARTYSTYSLFMMAN 259


>AM292347-1|CAL23159.2|  387|Tribolium castaneum gustatory receptor
           candidate 26 protein.
          Length = 387

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +1

Query: 448 IEEYKINRLLNITLLEGNGNSLIRISSSYSVCLLVD 555
           I  Y++  L    LL+  GN+  R  S+YS+ ++ +
Sbjct: 224 IAHYRVLWLSLSDLLQKMGNAYARTYSTYSLFMMAN 259


>AM292327-1|CAL23139.2|  387|Tribolium castaneum gustatory receptor
           candidate 6 protein.
          Length = 387

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +1

Query: 448 IEEYKINRLLNITLLEGNGNSLIRISSSYSVCLLVD 555
           I  Y++  L    LL+  GN+  R  S+YS+ ++ +
Sbjct: 224 IAHYRVLWLSLSDLLQKMGNAYARTYSTYSLFMMAN 259


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,006
Number of Sequences: 336
Number of extensions: 4570
Number of successful extensions: 13
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20961338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)