Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1688
         (776 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C4.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual       31   0.14 
SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase...    29   0.56 
SPBC543.03c |pku80||Ku domain protein Pku80|Schizosaccharomyces ...    27   3.0  
SPBC32F12.10 |||phosphoglucomutase |Schizosaccharomyces pombe|ch...    27   3.0  
SPCC330.09 |||rRNA processing protein Enp2 |Schizosaccharomyces ...    27   4.0  
SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC su...    27   4.0  
SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces pom...    27   4.0  
SPBC3H7.04 |||mitochondrial ribosomal protein subunit S26|Schizo...    27   4.0  
SPAC1006.08 |etd1||ethanol-hypersensitive mutant protein |Schizo...    26   6.9  
SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyc...    26   6.9  
SPBP4H10.05c |spe2||S-adenosylmethionine decarboxylase proenzyme...    26   6.9  
SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar...    26   6.9  
SPBC18E5.12c |mas2|SPBC23G7.02c|mitochondrial processing peptida...    25   9.2  

>SPAC23C4.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 104

 Score = 31.5 bits (68), Expect = 0.14
 Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
 Frame = -1

Query: 293 SSGFLACIHLA*CPGRP*HKACTRCCKENFSQCTSDSFSISLRLPSL---LFLVFHRFAT 123
           S GF+ C+H+           C  CCK N S+    S +I+LR+ SL     L+F  ++T
Sbjct: 48  SHGFIVCLHI----------RCCICCKYN-SKIKKPSLNIALRIQSLKIIKILIFQFYST 96

Query: 122 KDVY 111
           K ++
Sbjct: 97  KPLW 100


>SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase
           Gpt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1448

 Score = 29.5 bits (63), Expect = 0.56
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = -3

Query: 495 FQQRYVQEPVNLVLFNGAAS*SLQEVSSFTLLPRRRKVDD 376
           FQ +YV E +N +  NG  S  L+E  +F++L   +K  D
Sbjct: 328 FQSQYVPEGINTIWLNG-LSLDLEETDAFSILSLIKKEKD 366


>SPBC543.03c |pku80||Ku domain protein Pku80|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 695

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 17/46 (36%), Positives = 21/46 (45%)
 Frame = +1

Query: 379 INFPPSRKQSERTYLLKTLAGCPIEEYKINRLLNITLLEGNGNSLI 516
           +N P   K S +     T  G PI E +I  LLN  L E  G  L+
Sbjct: 538 VNVPVKPKYSSQETAFDT--GAPISEEQIEELLNSGLDEQEGEKLL 581


>SPBC32F12.10 |||phosphoglucomutase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 554

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -1

Query: 356 HSFLVPYVKTGPMYWFAIGFPSSG 285
           H+ L+PY + G ++ FA   P+SG
Sbjct: 305 HAELIPYFRDGGVHGFARSMPTSG 328


>SPCC330.09 |||rRNA processing protein Enp2 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 634

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -2

Query: 700 TRSSPSWVVNCPVAAEIRLSHRFVLLANFSFKTA 599
           T+  P+W+    +  +  LSHR  LL +F +  A
Sbjct: 22  TQRLPNWISKRKLKKDYALSHRIELLQDFEYPEA 55


>SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC
           subunit Psc3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 962

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = +2

Query: 200 VKSFLCSNGYKPCVKDAQDTTLNGCKLRILMKETQLQTSTLARSSRTVPERN 355
           + +F+  + Y   +KD  D+ L+ CKL    +   LQ   L+ S +TV   N
Sbjct: 532 ISNFVLFDNYTSTLKDPIDSILSFCKLNDFQESILLQ--LLSASIQTVCNNN 581


>SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 355

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 33  GRLCFLCWIMSEGIFVCVFKENSRHTV 113
           GR C +C + S+G+    FKE S  T+
Sbjct: 214 GRRCDMCTLSSKGLCPSAFKEKSGITI 240


>SPBC3H7.04 |||mitochondrial ribosomal protein subunit
           S26|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 220

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 578 PFLEQQLGSFKGEVREQNESMGQSDFGSHW 667
           P ++   GSF GE++ Q   +G S FG  W
Sbjct: 104 PGIDASFGSF-GELKSQMVDVGNSVFGDGW 132


>SPAC1006.08 |etd1||ethanol-hypersensitive mutant protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 391

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
 Frame = +2

Query: 515 YGSLPHI-QYAYWWITGVHDPVPFLEQQLGSFKGEVREQNESMGQSDFGSHWTIHDPR 685
           YGS  ++ +Y Y  +     P  F E +  SF+G   ++    G   +GS  T   P+
Sbjct: 5   YGSQQNLSEYFYSSVNMAEVPDTFEENRGHSFEGVTLQRRHVKGMKSYGSDITPRRPK 62


>SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 490

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -3

Query: 663 WLPKSDCPIDSFCSRTSPLKL 601
           WLP+S   + S CS  S LKL
Sbjct: 295 WLPQSTSQVISSCSANSALKL 315


>SPBP4H10.05c |spe2||S-adenosylmethionine decarboxylase proenzyme
           Spe2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -1

Query: 542 HTEYEEEIRISELPFPS 492
           HT +EEE+R  +L FPS
Sbjct: 143 HTSWEEEVRYLQLFFPS 159


>SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 507

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +2

Query: 515 YGSLPHIQYAYWWITG 562
           Y S  H   AYWW+TG
Sbjct: 110 YQSTSHTFTAYWWMTG 125


>SPBC18E5.12c |mas2|SPBC23G7.02c|mitochondrial processing peptidase
           complex alpha subunit Mas2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 494

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +1

Query: 388 PPSRKQSERTYLLKTLAGCPIEEYKINRLLNITLLEGNGNS 510
           PP   Q E T+++  + G P+ +  I  L  +  L G G S
Sbjct: 278 PPVPYQQEFTHVVIAMEGLPVTDPDIYALACLQFLLGGGGS 318


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,493,140
Number of Sequences: 5004
Number of extensions: 75529
Number of successful extensions: 216
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)