Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1688
         (776 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0162 - 9050981-9051003,9051141-9052273,9052388-9053310,905...    29   4.1  
01_02_0095 - 11076493-11077644,11077845-11077918,11078155-11078320     29   4.1  
10_02_0065 + 4865934-4866334,4866458-4866773                           29   5.4  
09_04_0289 + 16424385-16424447,16424678-16424766,16424925-164250...    29   5.4  
06_03_1189 + 28271185-28271394,28272421-28273326                       28   7.2  
03_02_0377 - 7898075-7898605,7900782-7901000,7901079-7901142,790...    28   7.2  
03_06_0517 + 34466743-34466879,34468478-34468588,34468997-344690...    28   9.5  

>05_03_0162 -
           9050981-9051003,9051141-9052273,9052388-9053310,
           9053560-9054615
          Length = 1044

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
 Frame = +2

Query: 488 CWKETATH*YGSL--PHIQYAYWWITGVHDPVPFLEQQLGSFKGEVREQNESMGQSDFGS 661
           C+KE     Y +L  P+ +YA  W++ +HD V    Q L   +  V    + +G+    S
Sbjct: 480 CYKELI---YRNLIEPNAEYAGEWVSTMHDVVRSFAQHLARDEALVISSRDEIGRGALKS 536

Query: 662 H 664
           H
Sbjct: 537 H 537


>01_02_0095 - 11076493-11077644,11077845-11077918,11078155-11078320
          Length = 463

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = -1

Query: 518 RISELPFPSSSVMFRSLLILYSSMGQPAKV 429
           R+ EL  PSS+ +  +L+ LY  +GQ +KV
Sbjct: 155 RMDELGIPSSTKLMNNLMGLYLELGQHSKV 184


>10_02_0065 + 4865934-4866334,4866458-4866773
          Length = 238

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +3

Query: 492 GRKRQLTDTDLFLIFSMLTGGSQGYTTLFHFLNNNWAVLKEKF 620
           G K+++    LF  FS+     Q YT+    +N NW  L+++F
Sbjct: 72  GMKQEVVQWRLFP-FSLHERAKQWYTSTVECVNGNWEKLRDRF 113


>09_04_0289 +
           16424385-16424447,16424678-16424766,16424925-16425068,
           16425713-16426189,16426320-16426527
          Length = 326

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = +3

Query: 312 PVHWPGLHVRYQKGMGIWPSARHQLSSVEEAK*KNLPPEDFSW 440
           P+ W  +  R++K M  +    H L+S EE + + +  E   W
Sbjct: 90  PISWSKVETRFEKDMLAFTGCSHSLTSEEEEELRKMRYEVSHW 132


>06_03_1189 + 28271185-28271394,28272421-28273326
          Length = 371

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = -1

Query: 569 RVPL*STSKHTEYEEEIRISELPFPSSSVMFRSLLILYSSMGQP 438
           R PL S S HT +   +    LPFPS +  F  +L+L+ ++  P
Sbjct: 26  RAPLPSLSLHTFFLLAMPPPSLPFPSLAYQF--VLVLWPNLANP 67


>03_02_0377 -
           7898075-7898605,7900782-7901000,7901079-7901142,
           7901226-7901282,7901373-7901471,7901744-7901793,
           7902378-7902422,7902967-7903062
          Length = 386

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
 Frame = +2

Query: 284 ILMKETQLQTSTLARSSRTVPERNGNLAF-SASSTFLRRGSKVKELTS*RL*LAAPLKST 460
           +  + TQ Q  T+ R S ++  R   +A  S  +  +    K+K   S +   AAP+ ST
Sbjct: 222 VQQQPTQKQAPTVLRRSASIAARQAAMAQQSQDAKTVPSSPKIKRQASTK---AAPVAST 278

Query: 461 RLTGS 475
           +LTG+
Sbjct: 279 KLTGA 283


>03_06_0517 +
           34466743-34466879,34468478-34468588,34468997-34469079,
           34469287-34469404,34469503-34469714,34470167-34470651,
           34470731-34470801,34470898-34470955,34471161-34471192,
           34471193-34471449,34471820-34471974,34472353-34472636,
           34472725-34472842,34473574-34473756,34473848-34474162
          Length = 872

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +1

Query: 490 LEGNGNSLIRISSSYSVCLLVDHRG 564
           L+G+GN  I + +S+ +  ++DHRG
Sbjct: 498 LDGDGNLDILVGTSFGLFYVIDHRG 522


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,327,189
Number of Sequences: 37544
Number of extensions: 517195
Number of successful extensions: 1363
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1324
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1363
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)