Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1688
         (776 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL023828-13|CAA19457.2|  419|Caenorhabditis elegans Hypothetical...    31   0.70 
Z71185-7|CAA94907.2|  520|Caenorhabditis elegans Hypothetical pr...    29   2.8  
AL117195-17|CAB60767.1|  534|Caenorhabditis elegans Hypothetical...    28   6.5  
Z95559-5|CAB63362.2|  326|Caenorhabditis elegans Hypothetical pr...    28   8.6  
AL132846-3|CAB60346.2| 1648|Caenorhabditis elegans Hypothetical ...    28   8.6  

>AL023828-13|CAA19457.2|  419|Caenorhabditis elegans Hypothetical
           protein Y17G7B.11 protein.
          Length = 419

 Score = 31.5 bits (68), Expect = 0.70
 Identities = 16/50 (32%), Positives = 27/50 (54%)
 Frame = -3

Query: 372 LKAKFPFLSGTVREDRANVLVCNWVSFIRILSLHPFSVVSWASLTQGLYP 223
           LK +FP + GT+   + N      +  +  +S  P+ VV+ AS +Q +YP
Sbjct: 304 LKCEFPLIIGTIPIRQMNQAAPGAMPTMPSVSAPPYPVVAGASASQAVYP 353


>Z71185-7|CAA94907.2|  520|Caenorhabditis elegans Hypothetical
           protein C35A5.5 protein.
          Length = 520

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -2

Query: 619 NFSFKTAQLLFKKWNRVVY 563
           NF F+  ++L KKWN V+Y
Sbjct: 10  NFDFRRIKILLKKWNVVIY 28


>AL117195-17|CAB60767.1|  534|Caenorhabditis elegans Hypothetical
           protein Y57A10A.24 protein.
          Length = 534

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -3

Query: 654 KSDCPIDSFCSRTSPLKLPNCCSRNGTGSCTPVIHQ 547
           K++CP  SFC  +S   +  CCS        P+  Q
Sbjct: 100 KNNCPDGSFCVSSSQDGMSICCSNRSIEKSFPITSQ 135


>Z95559-5|CAB63362.2|  326|Caenorhabditis elegans Hypothetical
           protein Y41E3.12 protein.
          Length = 326

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = -1

Query: 197 CTSDSFSISLRLPSLLFLVFHRFATKDVYRMPGIFLEYTYKYAF 66
           C + + ++SL L  ++ L FH +A     R+  I + + + YAF
Sbjct: 119 CMACATTVSLFLNRVISLAFHEYADSIEKRLAYISILFCFSYAF 162


>AL132846-3|CAB60346.2| 1648|Caenorhabditis elegans Hypothetical
            protein Y43D4A.5 protein.
          Length = 1648

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
 Frame = +2

Query: 560  GVHDPVPFLEQQLGSF--KGEVREQNESMGQSDFGSHWTIHD 679
            G H+P P L +Q+ SF   GE  E   S     FGS   I D
Sbjct: 972  GSHEPFPTLVEQVESFFSDGEEPESGSSSSLGSFGSVEKIAD 1013


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,467,590
Number of Sequences: 27780
Number of extensions: 430582
Number of successful extensions: 1302
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1236
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1302
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1872168044
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)