Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1688
         (776 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    25   0.79 
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    23   2.4  
S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    22   5.5  
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    21   9.7  
AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.           21   9.7  
AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.           21   9.7  

>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 25.0 bits (52), Expect = 0.79
 Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +1

Query: 409 ERTYLLKTLAGCPIEEYKINR-LLNITLLEGNGNSLIRI 522
           E   L KT+A CP  E  + +  L + L EG G SL RI
Sbjct: 67  EEVVLAKTIAECPESENTVQKAALVLRLREGIG-SLARI 104


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +1

Query: 259 YAKWMQAKNPDEGNPIANQY 318
           Y  W+     D+GNPI ++Y
Sbjct: 148 YYIWVDPVKDDKGNPIKDKY 167


>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -1

Query: 209 NFSQCTSDSFSISLRLPSLLFLVFHRFAT 123
           NFS C+S   +  +   +L F+  H  AT
Sbjct: 116 NFSTCSSHPTAAFISYGTLFFIYVHPSAT 144


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +3

Query: 522 LFLIFSMLTGGSQGY 566
           L  IFSML GG  G+
Sbjct: 11  LLAIFSMLVGGFGGF 25


>AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.
          Length = 136

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +1

Query: 478 NITLLEGNGNSLIRISSSYSV 540
           N   + GNGN+++  S+S SV
Sbjct: 25  NSDRVRGNGNAIVSNSASNSV 45


>AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.
          Length = 135

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +1

Query: 478 NITLLEGNGNSLIRISSSYSV 540
           N   + GNGN+++  S+S SV
Sbjct: 26  NSDRVRGNGNAIVSNSASNSV 46


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 232,783
Number of Sequences: 438
Number of extensions: 5060
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24396777
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)