Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1687
         (735 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9GNL3 Cluster: LD14; n=1; Drosophila melanogaster|Rep:...    72   2e-11
UniRef50_Q29GX4 Cluster: GA11746-PA; n=1; Drosophila pseudoobscu...    71   3e-11
UniRef50_Q7PRS1 Cluster: ENSANGP00000019305; n=2; Culicidae|Rep:...    64   4e-09
UniRef50_Q17GQ2 Cluster: Putative uncharacterized protein; n=1; ...    62   1e-08
UniRef50_Q65GU3 Cluster: Putative uncharacterized protein; n=1; ...    35   2.4  
UniRef50_A0Z6X6 Cluster: TonB-dependent receptor; n=1; marine ga...    35   2.4  
UniRef50_Q82R33 Cluster: Putative IS4 family ISFsp6-like transpo...    34   3.1  
UniRef50_Q0VSL2 Cluster: Outer membrane alginate export protein;...    34   3.1  
UniRef50_A4X1G3 Cluster: Diguanylate cyclase; n=2; Salinispora|R...    34   3.1  
UniRef50_A0BZW4 Cluster: Chromosome undetermined scaffold_14, wh...    34   3.1  
UniRef50_Q4DSQ3 Cluster: Putative uncharacterized protein; n=2; ...    33   5.5  
UniRef50_A6PIV5 Cluster: Methyl-accepting chemotaxis sensory tra...    33   7.3  
UniRef50_Q9VX19 Cluster: CG12986-PA; n=1; Drosophila melanogaste...    33   7.3  

>UniRef50_Q9GNL3 Cluster: LD14; n=1; Drosophila melanogaster|Rep:
           LD14 - Drosophila melanogaster (Fruit fly)
          Length = 321

 Score = 71.7 bits (168), Expect = 2e-11
 Identities = 36/71 (50%), Positives = 46/71 (64%), Gaps = 2/71 (2%)
 Frame = +2

Query: 509 WEPRIARGVY--LVTWEVDGGGLKGNLFTDSTRVTLSLWPDTVYHIQVELVSRTPGVDNE 682
           W+  IA      L+TWEV GGGL GNL TD+ R  LSLWPDTVY+IQV+   +  G+   
Sbjct: 133 WDEMIANASRQCLITWEVSGGGLIGNLLTDTARAELSLWPDTVYNIQVKCKHKLTGL-MR 191

Query: 683 RSETMTIDTSR 715
           RS  + +DTS+
Sbjct: 192 RSIKLNVDTSQ 202


>UniRef50_Q29GX4 Cluster: GA11746-PA; n=1; Drosophila
           pseudoobscura|Rep: GA11746-PA - Drosophila pseudoobscura
           (Fruit fly)
          Length = 330

 Score = 70.9 bits (166), Expect = 3e-11
 Identities = 35/69 (50%), Positives = 45/69 (65%), Gaps = 2/69 (2%)
 Frame = +2

Query: 509 WEPRIARGVY--LVTWEVDGGGLKGNLFTDSTRVTLSLWPDTVYHIQVELVSRTPGVDNE 682
           W+  IA      L+TWEV GGGL GNL TD++R  LSLWPDTVY+IQV    +  G+   
Sbjct: 150 WDEMIANASRQCLITWEVSGGGLIGNLLTDTSRAELSLWPDTVYNIQVTCKHKLTGM-MR 208

Query: 683 RSETMTIDT 709
           RS+ + +DT
Sbjct: 209 RSKKLNVDT 217


>UniRef50_Q7PRS1 Cluster: ENSANGP00000019305; n=2; Culicidae|Rep:
           ENSANGP00000019305 - Anopheles gambiae str. PEST
          Length = 95

 Score = 63.7 bits (148), Expect = 4e-09
 Identities = 30/65 (46%), Positives = 43/65 (66%)
 Frame = +2

Query: 539 LVTWEVDGGGLKGNLFTDSTRVTLSLWPDTVYHIQVELVSRTPGVDNERSETMTIDTSRA 718
           LV+WE+ GGGL GNL T++++V LSLWP+T YH+ V   ++       RS ++ +DTS A
Sbjct: 26  LVSWEISGGGLTGNLLTETSKVELSLWPNTKYHVHVTCRNKETDA-LIRSASLLVDTSEA 84

Query: 719 QKVQL 733
             V L
Sbjct: 85  VIVSL 89


>UniRef50_Q17GQ2 Cluster: Putative uncharacterized protein; n=1;
           Aedes aegypti|Rep: Putative uncharacterized protein -
           Aedes aegypti (Yellowfever mosquito)
          Length = 271

 Score = 62.5 bits (145), Expect = 1e-08
 Identities = 32/63 (50%), Positives = 40/63 (63%)
 Frame = +2

Query: 539 LVTWEVDGGGLKGNLFTDSTRVTLSLWPDTVYHIQVELVSRTPGVDNERSETMTIDTSRA 718
           LVTWEV GGGL GNL T+S+ V LSLWP+T Y +QV   S+       RS  + ++TS A
Sbjct: 75  LVTWEVSGGGLMGNLLTESSTVQLSLWPETNYRVQVTCRSKHTNT-MIRSAPIVLNTSTA 133

Query: 719 QKV 727
             V
Sbjct: 134 TSV 136


>UniRef50_Q65GU3 Cluster: Putative uncharacterized protein; n=1;
           Bacillus licheniformis ATCC 14580|Rep: Putative
           uncharacterized protein - Bacillus licheniformis (strain
           DSM 13 / ATCC 14580)
          Length = 201

 Score = 34.7 bits (76), Expect = 2.4
 Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
 Frame = +3

Query: 405 WVAHDANTSNHDEHKWTLKEISLI-HQKVLVIGEIAGSQE*HVAFILLHGK 554
           WVA      NHD ++WT+  + +  H+++L IG  +G+    +A +L  GK
Sbjct: 20  WVASYMENGNHDINEWTINLMDICPHERILEIGTGSGAALYRIAEMLEGGK 70


>UniRef50_A0Z6X6 Cluster: TonB-dependent receptor; n=1; marine gamma
           proteobacterium HTCC2080|Rep: TonB-dependent receptor -
           marine gamma proteobacterium HTCC2080
          Length = 798

 Score = 34.7 bits (76), Expect = 2.4
 Identities = 20/56 (35%), Positives = 32/56 (57%)
 Frame = +2

Query: 566 GLKGNLFTDSTRVTLSLWPDTVYHIQVELVSRTPGVDNERSETMTIDTSRAQKVQL 733
           GLKG+LF    ++ L+L+  +V   Q  + +R PG DN     + +D+S  Q V+L
Sbjct: 584 GLKGDLFNQKLQIQLALFDLSVDGRQRSVETRPPGQDNAIPTVINVDSS-VQGVEL 638


>UniRef50_Q82R33 Cluster: Putative IS4 family ISFsp6-like
           transposase; n=1; Streptomyces avermitilis|Rep: Putative
           IS4 family ISFsp6-like transposase - Streptomyces
           avermitilis
          Length = 333

 Score = 34.3 bits (75), Expect = 3.1
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 6/55 (10%)
 Frame = +3

Query: 132 ANTTRDTHERRRG-DACKWSSRSLAPTSAASII-----STCSPGVRCMRRAADGP 278
           + TT DTH    G D+  W+S +  PT++ ++      S  SP  RC   + DGP
Sbjct: 279 SRTTIDTHRPPTGADSASWTSFTQNPTASGTLATSPATSATSPSARCTDSSTDGP 333


>UniRef50_Q0VSL2 Cluster: Outer membrane alginate export protein;
           n=1; Alcanivorax borkumensis SK2|Rep: Outer membrane
           alginate export protein - Alcanivorax borkumensis
           (strain SK2 / ATCC 700651 / DSM 11573)
          Length = 460

 Score = 34.3 bits (75), Expect = 3.1
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = +2

Query: 464 DIPHSPKSLSYRGNCWEPRIARGVYLVTWEVDGGGL 571
           D+P    +L YR   W   +A G  L TW  DG  L
Sbjct: 147 DLPMESLNLDYRSTLWRANLAVGQQLTTWRSDGSDL 182


>UniRef50_A4X1G3 Cluster: Diguanylate cyclase; n=2; Salinispora|Rep:
           Diguanylate cyclase - Salinispora tropica CNB-440
          Length = 475

 Score = 34.3 bits (75), Expect = 3.1
 Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 6/75 (8%)
 Frame = +3

Query: 171 DACKWSSRSLAPTSAA--SIISTCSPGVRCMRRAADGPWRQIIQTQALAT----RVPSNN 332
           +AC+W+  +LAP++ A  S++      +RC+  AA G W Q+  T   AT    RV +  
Sbjct: 24  EACQWTVTALAPSTPATISVLLEVHDRLRCI--AATGSW-QVFSTVPPATGVVGRVHTTG 80

Query: 333 EGALLRVLVVDPQGL 377
             A++  L  DP  L
Sbjct: 81  HAAVITDLGADPNRL 95


>UniRef50_A0BZW4 Cluster: Chromosome undetermined scaffold_14, whole
           genome shotgun sequence; n=4; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_14,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 351

 Score = 34.3 bits (75), Expect = 3.1
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +3

Query: 375 LVTIYSPDENWVAHDANTSNHDEHKWTLKEISLI 476
           L T   P +NW+ HD N  N +  +WT+K  +++
Sbjct: 74  LKTTSGPGQNWLLHDMNYDNKEMIEWTMKNSNVV 107


>UniRef50_Q4DSQ3 Cluster: Putative uncharacterized protein; n=2;
           Trypanosoma cruzi|Rep: Putative uncharacterized protein
           - Trypanosoma cruzi
          Length = 591

 Score = 33.5 bits (73), Expect = 5.5
 Identities = 27/64 (42%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
 Frame = -1

Query: 585 KRLPLSPPPSTSHVTR*TPRAILGSQQFPL----*LRLFGE*GISLLKSTCAHRG*MYLR 418
           KR PLSPPP  S  T      + GS  F L     LR F    +SLLK++  HR   YL+
Sbjct: 424 KRRPLSPPPPPSVGTALRAEGVSGSTSFLLRVWRALRCFVVVQMSLLKAS-EHRPFTYLQ 482

Query: 417 RVRP 406
           +V P
Sbjct: 483 QVGP 486


>UniRef50_A6PIV5 Cluster: Methyl-accepting chemotaxis sensory
           transducer precursor; n=1; Shewanella sediminis
           HAW-EB3|Rep: Methyl-accepting chemotaxis sensory
           transducer precursor - Shewanella sediminis HAW-EB3
          Length = 695

 Score = 33.1 bits (72), Expect = 7.3
 Identities = 15/45 (33%), Positives = 28/45 (62%)
 Frame = +3

Query: 300 QALATRVPSNNEGALLRVLVVDPQGLVTIYSPDENWVAHDANTSN 434
           Q LAT+   N      RV+++ P+GL++  S ++N ++  AN+S+
Sbjct: 232 QQLATQAADNLFNGASRVIILSPRGLISADSRNKNNISKSANSSD 276


>UniRef50_Q9VX19 Cluster: CG12986-PA; n=1; Drosophila
           melanogaster|Rep: CG12986-PA - Drosophila melanogaster
           (Fruit fly)
          Length = 125

 Score = 33.1 bits (72), Expect = 7.3
 Identities = 11/38 (28%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +1

Query: 1   MCWENCELLQS-NYQVWGAVCEEKDICFPGCKIACEFH 111
           MC + C +L      +  ++C +++ C  GC++AC +H
Sbjct: 69  MCHDYCRVLDVVQRSLATSMCADREFCTRGCRVACSYH 106


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 779,591,609
Number of Sequences: 1657284
Number of extensions: 16317235
Number of successful extensions: 45834
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 43932
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45821
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 59677054775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)