Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1687
         (735 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2 |Schizosacc...    27   2.8  
SPAC5H10.10 |||NADPH dehydrogenase |Schizosaccharomyces pombe|ch...    27   3.7  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    27   3.7  
SPBC1105.04c |cbp1|abp1|CENP-B homolog|Schizosaccharomyces pombe...    26   6.4  
SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1 |S...    25   8.5  

>SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 830

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -3

Query: 703 NCHSFGPFIINARSTRY*LYLNV 635
           NC S GPF+IN+  T Y  Y  +
Sbjct: 359 NCSSRGPFVINSERTVYNNYQRI 381


>SPAC5H10.10 |||NADPH dehydrogenase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 392

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +1

Query: 265 LQTDLGVKSYKRKHSLHGYLQIMKVLFSG 351
           + TDL  + YK++ S+ G L I + LFSG
Sbjct: 44  VMTDLVKEYYKQRSSIPGTLLITESLFSG 72


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 9/33 (27%), Positives = 19/33 (57%)
 Frame = +3

Query: 390 SPDENWVAHDANTSNHDEHKWTLKEISLIHQKV 488
           +PDE W    +N +  D+  + + E++ +H+ V
Sbjct: 267 TPDEKWCFIRSNFAGFDDPSFQIPELAAVHRPV 299


>SPBC1105.04c |cbp1|abp1|CENP-B homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
 Frame = +3

Query: 159 RRRGDACKWSSRSLAPTSAASIISTCSPGV-RCMRRAADGPWRQIIQTQALATRVPSNNE 335
           R  G+  + ++    P+++ASI   CS GV   ++      W Q I  Q    R P N  
Sbjct: 300 RNSGNDLRNTTVITLPSTSASISQPCSEGVIYALKACYRKHWVQYILEQNELGRNPYNTT 359

Query: 336 GALLRVL 356
             L  +L
Sbjct: 360 NVLRAIL 366


>SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = +2

Query: 455 FKRDIPHSPKSLSYRGNCWEPRIARGVYL 541
           + R +P  P+ ++Y+G+   PR++R   L
Sbjct: 543 YNRTLPPMPEVVAYKGDEESPRVSRNTSL 571


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,185,682
Number of Sequences: 5004
Number of extensions: 67041
Number of successful extensions: 187
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)