Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1687
         (735 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0331 - 2609012-2609365,2609579-2609920,2610009-2610257,261...    33   0.24 
02_05_1023 + 33580416-33580904                                         31   0.95 
03_05_0283 - 22694137-22694952                                         29   5.1  
01_06_1536 + 38075023-38075359,38075834-38075963,38076204-380764...    28   6.7  
09_02_0523 + 10196272-10196375,10196551-10197488,10200247-102008...    28   8.8  
07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871     28   8.8  
02_05_0432 + 28936293-28936796,28937382-28939250                       28   8.8  
02_04_0631 - 24611729-24612183,24612467-24612629,24612649-24612870     28   8.8  
01_06_0166 + 27145250-27145778,27146062-27146516                       28   8.8  

>03_01_0331 -
           2609012-2609365,2609579-2609920,2610009-2610257,
           2610748-2610750
          Length = 315

 Score = 33.1 bits (72), Expect = 0.24
 Identities = 21/58 (36%), Positives = 26/58 (44%)
 Frame = +3

Query: 138 TTRDTHERRRGDACKWSSRSLAPTSAASIISTCSPGVRCMRRAADGPWRQIIQTQALA 311
           T  D  E   G A +  + S A   A S  +T S G    R  A G WRQ+ + Q LA
Sbjct: 135 TGTDVMEVATGAAQRLGAGSTAAADATSCAATASVGTARRRCGAPGEWRQLKRLQDLA 192


>02_05_1023 + 33580416-33580904
          Length = 162

 Score = 31.1 bits (67), Expect = 0.95
 Identities = 17/45 (37%), Positives = 19/45 (42%)
 Frame = +3

Query: 174 ACKWSSRSLAPTSAASIISTCSPGVRCMRRAADGPWRQIIQTQAL 308
           AC+W  RS  P  A   +  C   V   RRA  GP R    T  L
Sbjct: 120 ACRW--RSAPPCGACRDVRACCRAVEWWRRAKGGPQRHPASTSEL 162


>03_05_0283 - 22694137-22694952
          Length = 271

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = -2

Query: 320 YPCSECLRLYDLTPRS 273
           YPCS+ +R +D TPRS
Sbjct: 137 YPCSDTVRTFDRTPRS 152


>01_06_1536 +
           38075023-38075359,38075834-38075963,38076204-38076419,
           38076520-38077137,38077226-38078075
          Length = 716

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 20/82 (24%), Positives = 34/82 (41%), Gaps = 2/82 (2%)
 Frame = +3

Query: 69  RHLFSGLQNCLRISRGSCKSWANTTRDTHERRRGDACKWSSRSL--APTSAASIISTCSP 242
           R LF  + + L  +R   ++   TT +  E      CKW+   +  A T+   ++    P
Sbjct: 320 RDLFRFIMHLLHQARKKNETSKPTTDEHKEVASNVLCKWTKEDIDRAETAMLKVLRVVQP 379

Query: 243 GVRCMRRAADGPWRQIIQTQAL 308
           G     RA  G   + + +Q L
Sbjct: 380 GQWVSWRALRGAASKAVDSQEL 401


>09_02_0523 +
           10196272-10196375,10196551-10197488,10200247-10200896,
           10201003-10201746
          Length = 811

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -1

Query: 630 TVSGQSDRVTLVESVKRLPLSPPPSTS 550
           T + Q D   ++E  +  PL PPPST+
Sbjct: 140 TTTSQDDDAVVLEVYRSAPLLPPPSTT 166


>07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871
          Length = 233

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
 Frame = +3

Query: 21  TSPVQLPSMGS-----RV*RKRHLFSGLQNCLRISRGSCKSWANTTRDTHERRRGDACKW 185
           T  + LP MGS     RV +K   F+G+++    SRGS K+ +N  +  H+ +R    ++
Sbjct: 63  TVRMMLPPMGSSVVATRVPKKVLKFAGIEDVFTSSRGSTKTLSNFVK--HQMKRALNFQY 120

Query: 186 SSRSLAP 206
               L P
Sbjct: 121 KPPPLPP 127


>02_05_0432 + 28936293-28936796,28937382-28939250
          Length = 790

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 21/70 (30%), Positives = 30/70 (42%)
 Frame = +3

Query: 240 PGVRCMRRAADGPWRQIIQTQALATRVPSNNEGALLRVLVVDPQGLVTIYSPDENWVAHD 419
           P  RC+  A    + Q+IQ      R+  +N  +L R LV    G          +V H+
Sbjct: 232 PKGRCLEEACT-IYNQMIQMGGYKPRLSLHN--SLFRALVSKTGGTAKYNLKQAEFVYHN 288

Query: 420 ANTSNHDEHK 449
             T+N D HK
Sbjct: 289 VVTTNLDVHK 298


>02_04_0631 - 24611729-24612183,24612467-24612629,24612649-24612870
          Length = 279

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = +2

Query: 500 GNCWEPRIARGVYLVTWEVDGG 565
           G  W P   RGV  VTW V+ G
Sbjct: 95  GVAWRPARQRGVGCVTWSVEAG 116


>01_06_0166 + 27145250-27145778,27146062-27146516
          Length = 327

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = +2

Query: 500 GNCWEPRIARGVYLVTWEVDGG 565
           G  W P   RGV  VTW V+ G
Sbjct: 143 GVAWRPARRRGVGCVTWSVEAG 164


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,440,346
Number of Sequences: 37544
Number of extensions: 467642
Number of successful extensions: 1367
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1333
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1367
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)