Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1687
         (735 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44561| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.060
SB_14298| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_47269| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.2  
SB_32009| Best HMM Match : PKD (HMM E-Value=1.9e-19)                   29   3.0  
SB_37853| Best HMM Match : REJ (HMM E-Value=0.00025)                   29   3.0  
SB_36074| Best HMM Match : DUF885 (HMM E-Value=0.23)                   28   6.8  
SB_22513| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.8  

>SB_44561| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 173

 Score = 35.1 bits (77), Expect = 0.060
 Identities = 21/54 (38%), Positives = 31/54 (57%)
 Frame = +2

Query: 476 SPKSLSYRGNCWEPRIARGVYLVTWEVDGGGLKGNLFTDSTRVTLSLWPDTVYH 637
           +P+SLSY G+C+ P I   VY +     G  +  N F  S + ++SL  DTV+H
Sbjct: 50  APQSLSYTGSCYAPPI---VYGLACSASGSVIGSNGF--SLQYSISLTGDTVWH 98


>SB_14298| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 427

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +3

Query: 72  HLFSGLQNCLRISRGSCKSWANTTRDTHERR 164
           H+   L+NC R SR     +ANT R+ HE+R
Sbjct: 146 HVDICLRNCSRNSRTPFAKFANTVREIHEQR 176


>SB_47269| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 720

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -3

Query: 91  CNPENKCLFLHTRLPILGSWTG 26
           CN  N C+  HT+LP L  W G
Sbjct: 304 CNYGNNCMNHHTKLPYLWQWRG 325


>SB_32009| Best HMM Match : PKD (HMM E-Value=1.9e-19)
          Length = 3083

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 22/51 (43%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = -3

Query: 718 SSARVNCHS-FGPFIINARSTRY*LYLNVIHCIRPE*QGNSSRVSEKITFK 569
           SSA  N  S FGP I N  ++    Y NVI   R E Q N S V+   TF+
Sbjct: 345 SSAVCNSSSDFGPVIENCTTSEIETYNNVIAWERCEMQQNCSLVASIATFR 395


>SB_37853| Best HMM Match : REJ (HMM E-Value=0.00025)
          Length = 2182

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 18/64 (28%), Positives = 30/64 (46%)
 Frame = -3

Query: 598  SRVSEKITFKPPTINFPCNKINATCYSWLPAISPITKTFW*MRDISFKVHLCSSWLDVFA 419
            S++S +I  K P  N P N     CY W      ++ T W   D++    L +    V+A
Sbjct: 1832 SKLSNQINMKIPLRNMPVNDFTPMCYVW----DKVSST-WSFTDVTTH-FLINETGQVYA 1885

Query: 418  SCAT 407
            +C++
Sbjct: 1886 NCSS 1889


>SB_36074| Best HMM Match : DUF885 (HMM E-Value=0.23)
          Length = 689

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = +1

Query: 52  AVCEEKDICFPGCKIACEFHAEAARAGQTQPVIHTKGE 165
           +VCE+KD  +      CEF  EA RAG  Q +   K E
Sbjct: 51  SVCEQKDELYSA---PCEFSPEATRAGLPQLLEEIKEE 85


>SB_22513| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 231

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = +1

Query: 52  AVCEEKDICFPGCKIACEFHAEAARAGQTQPVIHTKGE 165
           +VCE+KD  +      CEF  EA RAG  Q +   K E
Sbjct: 51  SVCEQKDELYSA---PCEFSPEATRAGLPQLLEEIKEE 85


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,613,193
Number of Sequences: 59808
Number of extensions: 555518
Number of successful extensions: 1865
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1696
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1863
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1974037988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)