Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1687
         (735 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S80335-1|AAB21332.1|  798|Homo sapiens integrin beta 7 subunit p...    31   5.7  
S49378-1|AAB23688.1|  798|Homo sapiens integrin beta 7 subunit p...    31   5.7  
M68892-1|AAA59184.1|  798|Homo sapiens integrin beta-7 subunit p...    31   5.7  
M62880-1|AAA59185.1|  798|Homo sapiens integrin beta-7 subunit p...    31   5.7  
L23823-1|AAA36118.1|  798|Homo sapiens integrin beta 7 subunit p...    31   5.7  
BC015916-1|AAH15916.1|  798|Homo sapiens ITGB7 protein protein.        31   5.7  
AB209629-1|BAD92866.1|  843|Homo sapiens myosin VIIA variant pro...    31   5.7  
D86985-1|BAA13221.3| 1402|Homo sapiens KIAA0232 protein protein.       30   9.9  
BC150286-1|AAI50287.1| 1395|Homo sapiens KIAA0232 protein.             30   9.9  

>S80335-1|AAB21332.1|  798|Homo sapiens integrin beta 7 subunit
           protein.
          Length = 798

 Score = 30.7 bits (66), Expect = 5.7
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = +1

Query: 16  CELLQSNYQVWGAVCEEKDICFPGCKIACEFHAEAARAG 132
           C+ L   Y   GA+C++   C PGCK  CE H + A  G
Sbjct: 624 CQCLDGYY---GALCDQ---C-PGCKTPCERHRDCAECG 655


>S49378-1|AAB23688.1|  798|Homo sapiens integrin beta 7 subunit
           protein.
          Length = 798

 Score = 30.7 bits (66), Expect = 5.7
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = +1

Query: 16  CELLQSNYQVWGAVCEEKDICFPGCKIACEFHAEAARAG 132
           C+ L   Y   GA+C++   C PGCK  CE H + A  G
Sbjct: 624 CQCLDGYY---GALCDQ---C-PGCKTPCERHRDCAECG 655


>M68892-1|AAA59184.1|  798|Homo sapiens integrin beta-7 subunit
           protein.
          Length = 798

 Score = 30.7 bits (66), Expect = 5.7
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = +1

Query: 16  CELLQSNYQVWGAVCEEKDICFPGCKIACEFHAEAARAG 132
           C+ L   Y   GA+C++   C PGCK  CE H + A  G
Sbjct: 624 CQCLDGYY---GALCDQ---C-PGCKTPCERHRDCAECG 655


>M62880-1|AAA59185.1|  798|Homo sapiens integrin beta-7 subunit
           protein.
          Length = 798

 Score = 30.7 bits (66), Expect = 5.7
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = +1

Query: 16  CELLQSNYQVWGAVCEEKDICFPGCKIACEFHAEAARAG 132
           C+ L   Y   GA+C++   C PGCK  CE H + A  G
Sbjct: 624 CQCLDGYY---GALCDQ---C-PGCKTPCERHRDCAECG 655


>L23823-1|AAA36118.1|  798|Homo sapiens integrin beta 7 subunit
           protein.
          Length = 798

 Score = 30.7 bits (66), Expect = 5.7
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = +1

Query: 16  CELLQSNYQVWGAVCEEKDICFPGCKIACEFHAEAARAG 132
           C+ L   Y   GA+C++   C PGCK  CE H + A  G
Sbjct: 624 CQCLDGYY---GALCDQ---C-PGCKTPCERHRDCAECG 655


>BC015916-1|AAH15916.1|  798|Homo sapiens ITGB7 protein protein.
          Length = 798

 Score = 30.7 bits (66), Expect = 5.7
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = +1

Query: 16  CELLQSNYQVWGAVCEEKDICFPGCKIACEFHAEAARAG 132
           C+ L   Y   GA+C++   C PGCK  CE H + A  G
Sbjct: 624 CQCLDGYY---GALCDQ---C-PGCKTPCERHRDCAECG 655


>AB209629-1|BAD92866.1|  843|Homo sapiens myosin VIIA variant
           protein.
          Length = 843

 Score = 30.7 bits (66), Expect = 5.7
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = +3

Query: 171 DACKWSSRSLAPT--SAASIISTCSPGVRCMRRAADGPWRQ 287
           D C    R  AP+  S  S+++  SPG R  RR++   WRQ
Sbjct: 767 DTCPGEGRRAAPSALSQLSVLAGVSPGDRGTRRSSAWQWRQ 807


>D86985-1|BAA13221.3| 1402|Homo sapiens KIAA0232 protein protein.
          Length = 1402

 Score = 29.9 bits (64), Expect = 9.9
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
 Frame = +1

Query: 52   AVCEEKDICFPGCKIACEFHA---EAARAGQTQ--PVIHTKGEGVMRVSGALARW 201
            A CEE+   F GCK  C+F A       +GQ +  PV++T  +G+ R       W
Sbjct: 1241 AQCEEEINNFCGCKAGCQFPAYEDNPVSSGQLEEFPVLNTDIQGMNRSQEKQTWW 1295


>BC150286-1|AAI50287.1| 1395|Homo sapiens KIAA0232 protein.
          Length = 1395

 Score = 29.9 bits (64), Expect = 9.9
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
 Frame = +1

Query: 52   AVCEEKDICFPGCKIACEFHA---EAARAGQTQ--PVIHTKGEGVMRVSGALARW 201
            A CEE+   F GCK  C+F A       +GQ +  PV++T  +G+ R       W
Sbjct: 1234 AQCEEEINNFCGCKAGCQFPAYEDNPVSSGQLEEFPVLNTDIQGMNRSQEKQTWW 1288


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,505,188
Number of Sequences: 237096
Number of extensions: 2675936
Number of successful extensions: 9893
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9893
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8735159784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)