Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1687
         (735 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF209858-1|AAG43498.1|  321|Drosophila melanogaster LD14 protein.      72   9e-13
AE014298-1281|AAF46447.2|  321|Drosophila melanogaster CG12664-P...    72   9e-13
AB065095-1|BAB83666.1|  321|Drosophila melanogaster transmembran...    72   9e-13
AE014298-2610|AAF48764.1|  125|Drosophila melanogaster CG12986-P...    33   0.40 
X03121-2|CAA26897.1|  530|Drosophila melanogaster alpha protein ...    29   8.7  
AY071374-1|AAL48996.1|  530|Drosophila melanogaster RE40347p pro...    29   8.7  
AE014297-4523|AAF56999.1|  530|Drosophila melanogaster CG17957-P...    29   8.7  
AE014296-542|AAS64951.1|  384|Drosophila melanogaster CG1271-PC,...    29   8.7  
AE013599-2006|AAS64852.1|  186|Drosophila melanogaster CG33467-P...    29   8.7  

>AF209858-1|AAG43498.1|  321|Drosophila melanogaster LD14 protein.
          Length = 321

 Score = 71.7 bits (168), Expect = 9e-13
 Identities = 36/71 (50%), Positives = 46/71 (64%), Gaps = 2/71 (2%)
 Frame = +2

Query: 509 WEPRIARGVY--LVTWEVDGGGLKGNLFTDSTRVTLSLWPDTVYHIQVELVSRTPGVDNE 682
           W+  IA      L+TWEV GGGL GNL TD+ R  LSLWPDTVY+IQV+   +  G+   
Sbjct: 133 WDEMIANASRQCLITWEVSGGGLIGNLLTDTARAELSLWPDTVYNIQVKCKHKLTGL-MR 191

Query: 683 RSETMTIDTSR 715
           RS  + +DTS+
Sbjct: 192 RSIKLNVDTSQ 202


>AE014298-1281|AAF46447.2|  321|Drosophila melanogaster CG12664-PB
           protein.
          Length = 321

 Score = 71.7 bits (168), Expect = 9e-13
 Identities = 36/71 (50%), Positives = 46/71 (64%), Gaps = 2/71 (2%)
 Frame = +2

Query: 509 WEPRIARGVY--LVTWEVDGGGLKGNLFTDSTRVTLSLWPDTVYHIQVELVSRTPGVDNE 682
           W+  IA      L+TWEV GGGL GNL TD+ R  LSLWPDTVY+IQV+   +  G+   
Sbjct: 133 WDEMIANASRQCLITWEVSGGGLIGNLLTDTARAELSLWPDTVYNIQVKCKHKLTGL-MR 191

Query: 683 RSETMTIDTSR 715
           RS  + +DTS+
Sbjct: 192 RSIKLNVDTSQ 202


>AB065095-1|BAB83666.1|  321|Drosophila melanogaster transmembrane
           protein FEND protein.
          Length = 321

 Score = 71.7 bits (168), Expect = 9e-13
 Identities = 36/71 (50%), Positives = 46/71 (64%), Gaps = 2/71 (2%)
 Frame = +2

Query: 509 WEPRIARGVY--LVTWEVDGGGLKGNLFTDSTRVTLSLWPDTVYHIQVELVSRTPGVDNE 682
           W+  IA      L+TWEV GGGL GNL TD+ R  LSLWPDTVY+IQV+   +  G+   
Sbjct: 133 WDEMIANASRQCLITWEVSGGGLIGNLLTDTARAELSLWPDTVYNIQVKCKHKLTGL-MR 191

Query: 683 RSETMTIDTSR 715
           RS  + +DTS+
Sbjct: 192 RSIKLNVDTSQ 202


>AE014298-2610|AAF48764.1|  125|Drosophila melanogaster CG12986-PA
           protein.
          Length = 125

 Score = 33.1 bits (72), Expect = 0.40
 Identities = 11/38 (28%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +1

Query: 1   MCWENCELLQS-NYQVWGAVCEEKDICFPGCKIACEFH 111
           MC + C +L      +  ++C +++ C  GC++AC +H
Sbjct: 69  MCHDYCRVLDVVQRSLATSMCADREFCTRGCRVACSYH 106


>X03121-2|CAA26897.1|  530|Drosophila melanogaster alpha protein
           protein.
          Length = 530

 Score = 28.7 bits (61), Expect = 8.7
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +2

Query: 188 LSLVGPHQRREHHLDLFPWC 247
           +S+  PH  R+H LD   WC
Sbjct: 79  ISMEAPHMTRQHFLDRLDWC 98


>AY071374-1|AAL48996.1|  530|Drosophila melanogaster RE40347p
           protein.
          Length = 530

 Score = 28.7 bits (61), Expect = 8.7
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +2

Query: 188 LSLVGPHQRREHHLDLFPWC 247
           +S+  PH  R+H LD   WC
Sbjct: 79  ISMEAPHMTRQHFLDRLDWC 98


>AE014297-4523|AAF56999.1|  530|Drosophila melanogaster CG17957-PA
           protein.
          Length = 530

 Score = 28.7 bits (61), Expect = 8.7
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +2

Query: 188 LSLVGPHQRREHHLDLFPWC 247
           +S+  PH  R+H LD   WC
Sbjct: 79  ISMEAPHMTRQHFLDRLDWC 98


>AE014296-542|AAS64951.1|  384|Drosophila melanogaster CG1271-PC,
           isoform C protein.
          Length = 384

 Score = 28.7 bits (61), Expect = 8.7
 Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = -3

Query: 463 SFKVHLCSSWLDVFASCATQFSSGL*I-VTRPCGSTTRTLRRAPS 332
           +F +HL SS L + A+     SS   + ++  CG + RT+RRA S
Sbjct: 324 NFTLHLFSSILGLMAASPAMTSSANSLRISADCGWSGRTMRRAAS 368


>AE013599-2006|AAS64852.1|  186|Drosophila melanogaster CG33467-PA
           protein.
          Length = 186

 Score = 28.7 bits (61), Expect = 8.7
 Identities = 17/52 (32%), Positives = 26/52 (50%)
 Frame = -3

Query: 616 E*QGNSSRVSEKITFKPPTINFPCNKINATCYSWLPAISPITKTFW*MRDIS 461
           E QGN +RV + ++     IN+    +N  CY   P I+P  +    M+D S
Sbjct: 30  ECQGNQARV-KNVSCNVKPINWNTALVNLDCYLIYPLINPTIRVQVFMKDYS 80


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,401,310
Number of Sequences: 53049
Number of extensions: 769190
Number of successful extensions: 2300
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2300
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3314233461
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)