Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1687
         (735 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024741-1|AAK68394.3|  789|Caenorhabditis elegans Hypothetical ...    30   2.0  
Z81016-5|CAB02665.3|  640|Caenorhabditis elegans Hypothetical pr...    29   2.6  
AL132949-24|CAB61102.1|  860|Caenorhabditis elegans Hypothetical...    29   4.5  
Z22179-13|CAA80166.1|  164|Caenorhabditis elegans Hypothetical p...    28   7.9  

>AC024741-1|AAK68394.3|  789|Caenorhabditis elegans Hypothetical
           protein R05G9R.1 protein.
          Length = 789

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +1

Query: 19  ELLQSNYQVWGAVCEEKDICFPGCKIACEFHAEAARAG 132
           E++  N +VW + C + ++C P  K  C+  AE    G
Sbjct: 721 EVICENLEVWSSYCRQLELCCP-AKDRCDSEAEDDHVG 757


>Z81016-5|CAB02665.3|  640|Caenorhabditis elegans Hypothetical
           protein F21G4.1 protein.
          Length = 640

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 10/41 (24%), Positives = 22/41 (53%)
 Frame = +1

Query: 256 CVELQTDLGVKSYKRKHSLHGYLQIMKVLFSGFLWWIHKAL 378
           CV    D+  K +   H ++ + Q+  ++F+G  +W+ K +
Sbjct: 578 CVLYDNDMFTKMF---HGVNSFFQVFAIIFAGICYWLSKTV 615


>AL132949-24|CAB61102.1|  860|Caenorhabditis elegans Hypothetical
           protein Y53F4B.28 protein.
          Length = 860

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/55 (25%), Positives = 27/55 (49%)
 Frame = +2

Query: 536 YLVTWEVDGGGLKGNLFTDSTRVTLSLWPDTVYHIQVELVSRTPGVDNERSETMT 700
           Y+V   +  G      F +  R   +   D  +HI+  ++SRT  ++ +R+ T+T
Sbjct: 192 YMVDTSIPNGRALATDFENKVRAFFASISDLSHHIKYSVLSRTRELEEQRAITIT 246


>Z22179-13|CAA80166.1|  164|Caenorhabditis elegans Hypothetical
           protein F58A4.10 protein.
          Length = 164

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +2

Query: 443 AQVDFKRDIPHSPKSLSYRGNCWEPRI 523
           A +DF RD P  P  + +    W P I
Sbjct: 55  AILDFPRDYPQKPPKMKFISEIWHPNI 81


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,822,224
Number of Sequences: 27780
Number of extensions: 385094
Number of successful extensions: 1090
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1047
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1090
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)