Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1687
         (735 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g67100.1 68414.m07633 LOB domain protein 40 / lateral organ b...    29   3.2  
At2g02040.1 68415.m00139 peptide transporter (PTR2-B) / oligopep...    29   4.2  
At3g54100.1 68416.m05981 expressed protein similar to axi 1 [Nic...    28   5.6  
At2g37980.1 68415.m04662 expressed protein similar to axi 1 [Nic...    28   7.4  
At2g21520.1 68415.m02561 SEC14 cytosolic factor, putative / phos...    27   9.8  

>At1g67100.1 68414.m07633 LOB domain protein 40 / lateral organ
           boundaries domain protein 40 (LBD40) identical to
           SP|Q9ZW96 LOB domain protein 40 {Arabidopsis thaliana}
          Length = 233

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +3

Query: 33  QLPSMGSRV*RKRHLFSGLQNCLRISRGSCKSWANTTRDTHE 158
           Q P   +++   RH+ S  +N  R SRG+CK   N    +HE
Sbjct: 121 QAPPFNNKLCDIRHVSSRDENVKRRSRGACKEERNVRSLSHE 162


>At2g02040.1 68415.m00139 peptide transporter (PTR2-B) /
           oligopeptide transporter 1-1, putative (OPT1-1)
           identical to peptide transporter PTR2-B SP:P46032 from
           [Arabidopsis thaliana]; contains Pfam profile: PF00854
           POT family; identical to cDNA NT1 GI:510237
          Length = 585

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 18/69 (26%), Positives = 30/69 (43%)
 Frame = +3

Query: 282 RQIIQTQALATRVPSNNEGALLRVLVVDPQGLVTIYSPDENWVAHDANTSNHDEHKWTLK 461
           R +    AL T    N   +L+  LV       T  +  E W++ + N+ + D   W L 
Sbjct: 506 RSLCSALALLTNALGNYLSSLILTLVT----YFTTRNGQEGWISDNLNSGHLDYFFWLLA 561

Query: 462 EISLIHQKV 488
            +SL++  V
Sbjct: 562 GLSLVNMAV 570


>At3g54100.1 68416.m05981 expressed protein similar to axi 1
           [Nicotiana tabacum] GI:559921; contains Pfam profile
           PF03138: Plant protein family
          Length = 638

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 15/35 (42%), Positives = 16/35 (45%)
 Frame = +3

Query: 99  LRISRGSCKSWANTTRDTHERRRGDACKWSSRSLA 203
           LRI R S K W     D+ ERR    C  S R  A
Sbjct: 415 LRIMRYSVKHWKEKEIDSRERRIQGGCPMSPREAA 449


>At2g37980.1 68415.m04662 expressed protein similar to axi 1
           [Nicotiana tabacum] GI:559921; contains Pfam profile
           PF03138: Plant protein family
          Length = 638

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 16/44 (36%), Positives = 20/44 (45%)
 Frame = +3

Query: 72  HLFSGLQNCLRISRGSCKSWANTTRDTHERRRGDACKWSSRSLA 203
           +L +G    LRI R + K W     D+ ERR    C  S R  A
Sbjct: 410 NLTAGEAEELRIMRYNVKHWKEKEIDSRERRIQGGCPMSPREAA 453


>At2g21520.1 68415.m02561 SEC14 cytosolic factor, putative /
           phosphoglyceride transfer protein, putative contains
           Pfam PF00650 : CRAL/TRIO domain; contains Pfam PF03765 :
           CRAL/TRIO, N-terminus; similar to phosphatidylinositol
           transfer-like protein IV (GI:14486707) [Lotus japonicus]
          Length = 631

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 28/106 (26%), Positives = 47/106 (44%), Gaps = 12/106 (11%)
 Frame = +3

Query: 111 RGSCKSWANTTRDTHERRRGDACK-WSSRSLAPTSAASIISTCSPG----VRCMRRAADG 275
           +GS  S A +  D  +     A K +S   L P    + ++   PG    V  + +A D 
Sbjct: 384 KGSDTSTAESGSDAEDIGSPKAIKSFSHLRLTPVPGETSLAGSFPGYDEYVPMVDKAVDA 443

Query: 276 PWRQIIQTQALATR-------VPSNNEGALLRVLVVDPQGLVTIYS 392
            W+     Q +A+R       VP ++EG   RVLV+    L+ +++
Sbjct: 444 TWKVKPAIQRVASRGALMSPTVPKDHEGIKARVLVMFMAFLMAVFT 489


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,948,971
Number of Sequences: 28952
Number of extensions: 363174
Number of successful extensions: 1046
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1015
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1046
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1614253080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)