Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1685
         (696 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    23   1.8  
AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory recept...    23   1.8  
U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic pr...    23   2.4  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    21   7.3  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     21   9.6  

>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
           homeodomain protein protein.
          Length = 232

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 14/50 (28%), Positives = 21/50 (42%)
 Frame = -1

Query: 219 SLSPFNTATTPVSDLMYSKLVPLGPNILPFMSNAAGALSKPM*TLSTSPP 70
           SLSP +  T  +   ++  +  LG    PF   +    S P  +  T PP
Sbjct: 54  SLSPSSAHTVLIPQPLHPSVPRLGHPQWPFAWGSLXRSSSPQTSAPTGPP 103


>AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory receptor
           candidate 2 protein.
          Length = 587

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -1

Query: 102 KPM*TLSTSPPDIFNEET*RF 40
           KP+ TL++ P +I+N E  RF
Sbjct: 347 KPLLTLNSVPTEIYNLEIQRF 367


>U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic
           protein protein.
          Length = 372

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -1

Query: 579 WLYTYCCWGKS 547
           +L   CCWGKS
Sbjct: 8   YLIVACCWGKS 18


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -2

Query: 221 QVYHLSIPQLLQFLILCTL 165
           QVYHL I +    L  C +
Sbjct: 320 QVYHLEIEKYYNILYFCRI 338


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/23 (34%), Positives = 11/23 (47%)
 Frame = +2

Query: 302 RYERNWHNGALRKWRASAGHECS 370
           RY  N HN     W + +G + S
Sbjct: 164 RYHFNVHNSGTHFWHSHSGFQRS 186


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,943
Number of Sequences: 336
Number of extensions: 3169
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18322480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)