Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1685
(696 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0567 + 30029862-30030136,30030299-30030384,30031663-300318... 32 0.38
07_01_0861 + 7152976-7153061,7153222-7153310,7154862-7155013,715... 31 0.87
03_06_0443 + 33973229-33973311,33973422-33973510,33974873-339750... 31 0.87
03_02_0149 + 5933134-5933207,5935039-5935267,5935370-5935468,593... 31 0.87
04_03_0711 + 18945012-18945692,18945790-18946845,18946863-18947066 31 1.2
05_05_0237 - 23526613-23527178,23527979-23528066,23528384-235285... 30 1.5
01_06_1141 + 34845834-34845931,34846110-34846198,34846535-348466... 30 2.0
10_07_0195 + 13972656-13972970,13973518-13973848,13975312-139754... 29 3.5
08_02_0602 + 19183549-19184919 28 6.2
08_01_0429 + 3767486-3768022,3768247-3768523,3769132-3769364,377... 28 6.2
05_06_0046 - 25157093-25157431,25157810-25157928,25158024-251581... 28 6.2
04_04_0935 - 29509135-29511732 28 6.2
07_03_1210 + 24903389-24903695,24904383-24904468,24904545-249046... 28 8.1
04_04_0919 - 29422003-29422267,29422411-29422660,29423163-294234... 28 8.1
>02_05_0567 +
30029862-30030136,30030299-30030384,30031663-30031811,
30032581-30032685,30032779-30032895,30033251-30033394,
30033519-30033668
Length = 341
Score = 32.3 bits (70), Expect = 0.38
Identities = 16/42 (38%), Positives = 25/42 (59%)
Frame = +2
Query: 86 KVYIGLDNAPAAFDIKGRILGPNGTNLEYIRSETGVVAVLKG 211
KV I +D P F+ GRILGP G +L+ + + T +++G
Sbjct: 195 KVDIPVDKYPT-FNFVGRILGPRGNSLKRVEATTDCRVLIRG 235
>07_01_0861 +
7152976-7153061,7153222-7153310,7154862-7155013,
7155254-7155382,7155465-7155581,7156353-7156496,
7156749-7156851,7157471-7157565,7157953-7158096
Length = 352
Score = 31.1 bits (67), Expect = 0.87
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +2
Query: 122 FDIKGRILGPNGTNLEYIRSETGVVAVLKG 211
F+ GRILGP G +L+ + + TG ++G
Sbjct: 153 FNFVGRILGPRGNSLKRVEASTGCRVFIRG 182
>03_06_0443 +
33973229-33973311,33973422-33973510,33974873-33975024,
33975463-33975579,33975729-33975776,33976169-33976312,
33976715-33976858
Length = 258
Score = 31.1 bits (67), Expect = 0.87
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +2
Query: 122 FDIKGRILGPNGTNLEYIRSETGVVAVLKG 211
F+ GRILGP G +L+ + + TG ++G
Sbjct: 109 FNFVGRILGPRGNSLKRVEASTGCRVFIRG 138
>03_02_0149 +
5933134-5933207,5935039-5935267,5935370-5935468,
5935582-5935616,5935694-5935769,5936552-5936662,
5937001-5937087,5937302-5937395,5937489-5937606,
5938047-5938542,5939263-5939298,5940047-5940578,
5940668-5940792
Length = 703
Score = 31.1 bits (67), Expect = 0.87
Identities = 13/41 (31%), Positives = 25/41 (60%)
Frame = +2
Query: 89 VYIGLDNAPAAFDIKGRILGPNGTNLEYIRSETGVVAVLKG 211
+++G +A + ++ + GPN + +I +ETGV VL+G
Sbjct: 217 IFLGF-HADPSLNVAAWVRGPNDQYINHIMNETGVTVVLRG 256
>04_03_0711 + 18945012-18945692,18945790-18946845,18946863-18947066
Length = 646
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +2
Query: 77 LVDKVYIGLDNAPAAFDIKGRILGPNGTNLEYIRSETGVVAVLKG 211
L K+YI + P ++ G I+GP G + + ETG V++G
Sbjct: 95 LQKKLYIPMKEFPG-YNFIGLIIGPRGNTQKRMEKETGAKIVIRG 138
>05_05_0237 -
23526613-23527178,23527979-23528066,23528384-23528527,
23528674-23528790,23528860-23528970,23530911-23531062,
23531362-23531450,23531664-23531761
Length = 454
Score = 30.3 bits (65), Expect = 1.5
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +2
Query: 122 FDIKGRILGPNGTNLEYIRSETGVVAVLKG 211
F+ GR+LGP G +L+ I + TG ++G
Sbjct: 151 FNFIGRLLGPRGNSLKRIEASTGCRVFIRG 180
>01_06_1141 +
34845834-34845931,34846110-34846198,34846535-34846686,
34847473-34847583,34847702-34847818,34847989-34848156,
34848563-34848703
Length = 291
Score = 29.9 bits (64), Expect = 2.0
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +2
Query: 122 FDIKGRILGPNGTNLEYIRSETGVVAVLKG 211
F+ GR+LGP G +L+ + + TG ++G
Sbjct: 151 FNFIGRLLGPRGNSLKRVEASTGCRVFIRG 180
>10_07_0195 +
13972656-13972970,13973518-13973848,13975312-13975463,
13975573-13976280,13976424-13976615,13977264-13977425
Length = 619
Score = 29.1 bits (62), Expect = 3.5
Identities = 18/63 (28%), Positives = 27/63 (42%)
Frame = +2
Query: 20 CIVYEVKNL*VSSLNMSGGLVDKVYIGLDNAPAAFDIKGRILGPNGTNLEYIRSETGVVA 199
C E+ N+ V SL V I P + ++GP G ++YIR +G
Sbjct: 479 CAPEELPNVVVPSLTSQSPAVTSQVIMKMQVPIFY--AEAVIGPTGARIDYIRQASGSSV 536
Query: 200 VLK 208
V+K
Sbjct: 537 VIK 539
>08_02_0602 + 19183549-19184919
Length = 456
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = +2
Query: 368 STTDINNNIGSSTCTTTNSHSR 433
+TT+ NNN S+T TTT SH R
Sbjct: 15 TTTNNNNNPVSTTTTTTASHQR 36
>08_01_0429 +
3767486-3768022,3768247-3768523,3769132-3769364,
3773221-3773625,3773717-3773755
Length = 496
Score = 28.3 bits (60), Expect = 6.2
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = -2
Query: 86 YLRAHQTYLMKKPRGFSLHKQYNNKMHL 3
YLR +QT+L ++P G S+H +N+ L
Sbjct: 132 YLRGNQTFLARRP-GVSVHSDVDNETSL 158
>05_06_0046 - 25157093-25157431,25157810-25157928,25158024-25158189,
25158289-25158415,25158490-25158590,25158719-25158905,
25159000-25159100,25159220-25160194,25160325-25160423,
25160500-25160972,25161307-25161420,25161830-25161900,
25162015-25162086,25162334-25162377
Length = 995
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -2
Query: 353 RRPSTCAALHCASSARIVSIRFCANDLAAAN 261
RR + AL CAS R+VS + + +AA N
Sbjct: 961 RRQADAQALACASGGRVVSSAWVIDSIAACN 991
>04_04_0935 - 29509135-29511732
Length = 865
Score = 28.3 bits (60), Expect = 6.2
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -1
Query: 573 YTYCCWGKSCRTVGCR 526
+T+CC KSC +GCR
Sbjct: 139 FTFCCVMKSCGALGCR 154
>07_03_1210 +
24903389-24903695,24904383-24904468,24904545-24904649,
24904737-24905531,24905719-24905941,24906318-24906712
Length = 636
Score = 27.9 bits (59), Expect = 8.1
Identities = 16/37 (43%), Positives = 18/37 (48%)
Frame = -1
Query: 651 GSDVKLVFETCTPGCTMGISCPFSWLYTYCCWGKSCR 541
GSD+ FE TPG T F LY+ C K CR
Sbjct: 307 GSDIIKTFEQWTPGKTK-FPKQFERLYSKCLGTKICR 342
>04_04_0919 -
29422003-29422267,29422411-29422660,29423163-29423481,
29423625-29424794,29424879-29425388,29425449-29425607
Length = 890
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -2
Query: 110 RYLSLCKLYLRAHQTYLMKKPRGFSLHKQYNN 15
R+ +C+ R QT L P+ L K YNN
Sbjct: 431 RFHDICQKLSRCFQTILSHVPKSVILEKNYNN 462
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,283,455
Number of Sequences: 37544
Number of extensions: 333658
Number of successful extensions: 937
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 911
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 937
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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